Browse Element(s) Details


Os.7143.1.S1_at

Description gb:AK069169.1
DB_XREF= gi:32979193
TID=Os.7143.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008O18, full insert sequence.
FL= gb:AK069169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0719411/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7143.1.S1_at--114--9471Chr07:3559496..3559520 (25 bp)
TCTGGCTTGGATGACGCGAGAGTTT
LOC_Os07g07194
Os.7143.1.S1_at--350--8531Chr07:3559489..3559513 (25 bp)
TGGATGACGCGAGAGTTTGTTGTAC
LOC_Os07g07194
Os.7143.1.S1_at--177--5811Chr07:3559484..3559508 (25 bp)
GACGCGAGAGTTTGTTGTACTTGTA
LOC_Os07g07194
Os.7143.1.S1_at--629--4611Chr07:3559481..3559505 (25 bp)
GCGAGAGTTTGTTGTACTTGTAACA
LOC_Os07g07194
Os.7143.1.S1_at--877--3591Chr07:3559465..3559489 (25 bp)
CTTGTAACAATGTACCATCCCTTCG
LOC_Os07g07194
Os.7143.1.S1_at--479--7051Chr07:3559462..3559486 (25 bp)
GTAACAATGTACCATCCCTTCGCAG
LOC_Os07g07194
Os.7143.1.S1_at--221--2991Chr07:3559457..3559481 (25 bp)
AATGTACCATCCCTTCGCAGCATCT
LOC_Os07g07194
Os.7143.1.S1_at--247--551Chr07:3559449..3559473 (25 bp)
ATCCCTTCGCAGCATCTGTTCCAGA
LOC_Os07g07194
Os.7143.1.S1_at--1159--10631Chr07:3559444..3559468 (25 bp)
TTCGCAGCATCTGTTCCAGATGACT
LOC_Os07g07194
Os.7143.1.S1_at--1062--451Chr07:3559436..3559460 (25 bp)
ATCTGTTCCAGATGACTAAGGATAG
LOC_Os07g07194
Os.7143.1.S1_at--560--2911Chr07:3559419..3559443 (25 bp)
AAGGATAGATGATCACTAGAGGCTG
LOC_Os07g07194
Target Sequence 
TCTGGCTTGGATGACGCGAGAGTTTGTTGTACTTGTAACAATGTACCATCCCTTCGCAGCATCTGTTCCAGATGACTAAG
GATAGATGATCACTAGAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis