Browse Element(s) Details


Os.20638.1.S1_at

Description gb:AK109744.1
DB_XREF= gi:32994953
TID=Os.20638.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (OSJNBb0093E13.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E08, full insert sequence.
FL= gb:AK109744.1 gb:AK108472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5711011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57070Os.26836.1.S1_a_at11/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57070Os.26836.4.S1_x_at10/113+32471219..32479112amine oxidase, putative, expressed
LOC_Os03g57080OsAffx.13519.1.S1_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57080OsAffx.13519.1.S1_x_at11/113+32479899..32481511Patatin-like phospholipase family protein, expressed
LOC_Os03g57090OsAffx.22655.1.S1_at10/113+32490276..32493417transmembrane ARV1-like family protein, putative
LOC_Os03g57100Os.7300.1.S1_at11/113+32493480..32499105Serologically defined breast cancer antigen NY-BR-84, putative, expressed
LOC_Os03g57110Os.20638.1.S2_at11/113+32499285..32504041expressed protein
LOC_Os03g57110Os.20638.1.S1_at11/113+32499285..32504041expressed protein
LOC_Os03g57120Os.141.1.S1_at11/113+32505395..32508261Ferredoxin-NADP reductase, root isozyme, chloroplast precursor, putative, expressed
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20638.1.S1_at--342--991Chr03:32502327..32502351 (25 bp)
AGGAGGATCATTCATCTCGCGCGGA
LOC_Os03g57110
Os.20638.1.S1_at--936--5531Chr03:32502284..32502308 (25 bp)
GAAACAGAAGTCCATGGTTGTCTTG
LOC_Os03g57110
Os.20638.1.S1_at--64--2451Chr03:32502257..32502281 (25 bp)
AAAATCTGACTTCCGTCACCTGAAT
LOC_Os03g57110
Os.20638.1.S1_at--643--1771Chr03:32502145..32502169 (25 bp)
ACCGAGGAGCTCTTCAAATTCAAAC
LOC_Os03g57110
Os.20638.1.S1_at--921--5311Chr03:32502116..32502140 (25 bp)
GAAGGGATTGCTTACTCTCAAGAAT
LOC_Os03g57110
Os.20638.1.S1_at--928--2991Chr03:32502094..32502118 (25 bp)
AATGATGTGGAATTTGAGCCGTTAA
LOC_Os03g57110
Os.20638.1.S1_at--341--9191Chr03:32502009..32502033 (25 bp)
TGCCTTCACTTTGCATGACTAATGA
LOC_Os03g57110
Os.20638.1.S1_at--916--1831Chr03:32501934..32501958 (25 bp)
ACGAAAATCAGCATCTTAGAGGTTT
LOC_Os03g57110
Os.20638.1.S1_at--878--8211Chr03:32501882..32501906 (25 bp)
GGAATTATCATCTCAGCTATCTGAA
LOC_Os03g57110
Os.20638.1.S1_at--964--6631Chr03:32501834..32501858 (25 bp)
GTTGTCATCAGAAGACGATCTCCTG
LOC_Os03g57110
Os.20638.1.S1_at--621--5771Chr03:32501821..32501845 (25 bp)
GACGATCTCCTGAGACAAATTGCCA
LOC_Os03g57110
Target Sequence 
AGGAGGATCATTCATCTCGCGCGGAGGAAAATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGAC
TTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCA
TGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATG
TGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATG
CCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAA
TCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAG
AAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis