Browse Element(s) Details


Os.20717.1.S1_at

Description gb:AK101671.1
DB_XREF= gi:32986880
TID=Os.20717.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.20717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.14 (P0446G04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058D09, full insert sequence.
FL= gb:AK101671.1 gb:AK105654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein
LOC_Os01g61480Os.38423.1.S1_at11/111+35884997..35886074Transcription factor LAX PANICLE, putative, expressed
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20717.1.S1_at--109--7391Chr01:35870634..35870658 (25 bp)
GTGACCACCATGTCGGAGCGGCGCA
LOC_Os01g61460
Os.20717.1.S1_at--975--1711Chr01:35870799..35870823 (25 bp)
ACCAGGATAATGTCCAGGCCGCAGC
LOC_Os01g61460
Os.20717.1.S1_at--521--891Chr01:35870814..35870838 (25 bp)
AGGCCGCAGCTGGTATAGCAAATTC
LOC_Os01g61460
Os.20717.1.S1_at--676--1931Chr01:35870848..35870872 (25 bp)
ACGGAGACCGGATTACTCATAGGCA
LOC_Os01g61460
Os.20717.1.S1_at--369--931Chr01:35870868..35870892 (25 bp)
AGGCAGAGCTGGTTGGTTATACACA
LOC_Os01g61460
Os.20717.1.S1_at--606--9691Chr01:35870931..35870955 (25 bp)
TCACATTCTTTTCTGGCCGTTTCAC
LOC_Os01g61460
Os.20717.1.S1_at--62--4511Chr01:35870946..35870970 (25 bp)
GCCGTTTCACCTGCTGTCAGAAGAT
LOC_Os01g61460
Os.20717.1.S1_at--740--7991Chr01:35871054..35871078 (25 bp)
GGATGGCCATGCTTGCGTACGTTAC
LOC_Os01g61460
Os.20717.1.S1_at--889--9931Chr01:35871071..35871095 (25 bp)
TACGTTACGTGCCTGCGTGCACAGA
LOC_Os01g61460
Os.20717.1.S1_at--891--1291Chr01:35871093..35871117 (25 bp)
AGATGCGCTGTAAGGTTCCTGACCA
LOC_Os01g61460
Os.20717.1.S1_at--305--1011Chr01:35871105..35871129 (25 bp)
AGGTTCCTGACCAAACTGTACATTG
LOC_Os01g61460
Target Sequence 
GTGACCACCATGTCGGAGCGGCGCAAGGACGGGCACACCTCCGTGCACACCATCCGGCAGGGCAAGGTGCTGACGCCGGA
GCAGCAGGCCGACCCTGGCACCTACGCCGACTGCATCCACTGGTGCCTCCCCGGCGTCCCTGACATCTGGAACCTCATCC
TCTACACCAGGATAATGTCCAGGCCGCAGCTGGTATAGCAAATTCCAAGAATTTACGGAGACCGGATTACTCATAGGCAG
AGCTGGTTGGTTATACACAATCATCGTACTGAAAAGAGATTTTTCTTCTTCTTTTCTTCACATTCTTTTCTGGCCGTTTC
ACCTGCTGTCAGAAGATGTCTTTCATTTGTTCTTTTTCTTCAGGGGTTAGGTTAAGTGGGAAGAGATCGATACAGTATAT
GGTTATATATATGGCTAATGGGATGGCCATGCTTGCGTACGTTACGTGCCTGCGTGCACAGATGCGCTGTAAGGTTCCTG
ACCAAACTGTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis