Browse Element(s) Details


Os.20857.1.S1_at

Description gb:AK062182.1
DB_XREF= gi:32972200
TID=Os.20857.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D10, full insert sequence.
FL= gb:AK104384.1 gb:AK062182.1 gb:AK064863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1590011/1150S ribosomal protein L21, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15870Os.24599.1.A1_at10/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15870Os.51870.1.S1_at1/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15880Os.10875.2.S1_x_at10/112+8984540..8989569expressed protein
LOC_Os02g15880Os.10875.2.S1_at7/112+8984540..8989569expressed protein
LOC_Os02g15890OsAffx.12063.1.S1_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15890OsAffx.12063.1.S1_x_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15900Os.20857.1.S1_at11/112+9005262..900748450S ribosomal protein L21, chloroplast precursor, putative, expressed
LOC_Os02g15910OsAffx.2635.1.S1_at11/112+9009848..9010538hypothetical protein
LOC_Os02g15920OsAffx.24273.1.S1_at11/112+9011714..9016578hypothetical protein
LOC_Os02g15930Os.51778.1.S1_at11/112+9021452..9023100expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20857.1.S1_at--1108--5571Chr02:9006581..9006605 (25 bp)
GAAAGGCGCCAATGTCAATGATCAG
LOC_Os02g15900
Os.20857.1.S1_at--979--1091Chr02:9005949..9005973 (25 bp)
AGTGGTGACCAATGCTGCTGTTCAT
LOC_Os02g15900
Os.20857.1.S1_at--351--2871Chr02:9005600..9005624 (25 bp)
AAGTGGATACGAGGACTTCCCTGCT
LOC_Os02g15900
Os.20857.1.S1_at--987--4271Chr02:9005581..9005605 (25 bp)
CCTGCTGACCCGATACTTGAGTATG
LOC_Os02g15900
Os.20857.1.S1_at--564--10771Chr02:9005565..9005589 (25 bp)
TTGAGTATGTTCCAGCTTAAGAGCA
LOC_Os02g15900
Os.20857.1.S1_at--1068--10791Chr02:9005444..9005468 (25 bp)
TTGTTCATGTGTTCGAGTGCTGCCA
LOC_Os02g15900
Os.20857.1.S1_at--613--6111Chr02:9005430..9005454 (25 bp)
GAGTGCTGCCAGTCATCCAGTTGTT
LOC_Os02g15900
Os.20857.1.S1_at--1150--571Chr02:9005416..9005440 (25 bp)
ATCCAGTTGTTCCATCCTTTGTTTA
LOC_Os02g15900
Os.20857.1.S1_at--453--571Chr02:9005403..9005427 (25 bp)
ATCCTTTGTTTATTCCACCATCTGT
LOC_Os02g15900
Os.20857.1.S1_at--926--7431Chr02:9005360..9005384 (25 bp)
GTGTATCCTAGCCAACTGTATTATT
LOC_Os02g15900
Os.20857.1.S1_at--786--1711Chr02:9005303..9005327 (25 bp)
ACCACGATACGGATGTTTTAGCTTT
LOC_Os02g15900
Target Sequence 
GAAAGGCGCCAATGTCAATGATCAGATAATATTAAACAAGGTATTACTGGTATCAACTAGAGACAAGGCTTACATTGGCA
TGCCAGTGGTGACCAATGCTGCTGTTCATGCAGTGGTTGAGGAACAGGGACGGGATGATAAAGTGATAGTCTTCAAATAT
AAGAAGAAGAAGAAGTACCAGAGGAAACTTGGTCACAGACAGCCAAACACAAGGTTAAGAATTACCGGCATAAGTGGATA
CGAGGACTTCCCTGCTGACCCGATACTTGAGTATGTTCCAGCTTAAGAGCAATTGTAAGTTCTGTAGTTACAAACAACTG
GTAGTACATTAGAATACGAGTGCTACCTTTTCTTGTCTGGAAGAACAGTTTTTGAACAAAATTTGCTTTGTTCATGTGTT
CGAGTGCTGCCAGTCATCCAGTTGTTCCATCCTTTGTTTATTCCACCATCTGTTTTGTTCATTCTGATATTGTGTATCCT
AGCCAACTGTATTATTTTCACTGTGCTTAAAAAAAGAGNAGAGCATNTTTACCACGATACGGATGTTTTAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis