Browse Element(s) Details


Os.20860.1.S1_at

Description gb:AK068092.1
DB_XREF= gi:32978110
TID=Os.20860.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131B21, full insert sequence.
FL= gb:AK068092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g065001/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20860.1.S1_at--922--5532Chr09:11530450..11530474 (25 bp)
GAAACATAACCGGAGTGGAACCACT
NONE
Os.20860.1.S1_at--669--8813Chr08:27240556..27240580 (25 bp)
TGTTGATTTGTTTGTCTGTCTGCTC
NONE
Os.20860.1.S1_at--146--6873Chr08:27240565..27240589 (25 bp)
GTTTGTCTGTCTGCTCAATGATGTA
NONE
Os.20860.1.S1_at--213--3613Chr09:11530304..11530328 (25 bp)
CATTGTTCTCCTCGTTGCAGGATAT
NONE
Os.20860.1.S1_at--743--10731Chr03:4066524..4066548 (25 bp)
TTGACTTGTTGAATACCGCCATCGT
NONE
Os.20860.1.S1_at--227--4432Chr09:11530235..11530259 (25 bp)
GCCATCTGGTTTCTTTTGCCCTGAT
NONE
Os.20860.1.S1_at--404--9552Chr09:11530224..11530248 (25 bp)
TCTTTTGCCCTGATGTGATGAACAC
NONE
Os.20860.1.S1_at--281--3433Chr08:27240722..27240746 (25 bp)
CAGAGTATTCACGTACATGTGGCAA
NONE
Os.20860.1.S1_at--930--6512Chr09:11529979..11530003 (25 bp)
GATATTGTGTACTTCAGTCCTTGCA
NONE
Os.20860.1.S1_at--116--7273Chr08:27240981..27241005 (25 bp)
GTCCTTGCATGCTTTCAGATTTGTA
NONE
Os.20860.1.S1_at--966--10133Chr08:27241029..27241053 (25 bp)
TATGCTGAATGTTTCCTGTAAATGC
NONE
Target Sequence 
GAAACATAACCGGAGTGGAACCACTACAACCAAAGAAGAAAGAGATGGATTTTGAAACAAGACATGGATGATGCTCAATT
GATAATTCATTCATCAACAACATGTTGATTTGTTTGTCTGTCTGCTCAATGATGTACAGTTGACACCATTGTTCTCCTCG
TTGCAGGATATATTGACTTGTTGAATACCGCCATCGTCGCCACATCAGCCTGGCCGCCATCTGGTTTCTTTTGCCCTGAT
GTGATGAACACATCTGAAGGAGAGCAGCAGAGTATTCACGTACATGTGGCAAAGCAGCAGGTGAGGATAATCATTTTATC
ACCATAGTCAAAAGTATGCCCCAAAAATTATTGCCAGTGGTTGATTAGGAGACAATTAGATTGAATATCTTTATAGAAAT
AGATGGATATTGTGTACTTCAGTCCTTGCATGCTTTCAGATTTGTATGCTAAATTTTCCTGTAGATGCATATGCTGAATG
TTTCCTGTAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis