Browse Element(s) Details


Os.20865.1.S1_at

Description gb:AK059420.1
DB_XREF= gi:32969438
TID=Os.20865.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D11, full insert sequence.
FL= gb:AK071740.1 gb:AK059420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3552011/11deoxynucleoside kinase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35490OsAffx.4528.1.S1_at11/115+21007912..21008274hypothetical protein
LOC_Os05g35500Os.10175.1.S1_at11/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35500Os.57514.1.S1_x_at2/115+21016108..21017402MYB6, putative, expressed
LOC_Os05g35510OsAffx.27178.1.S1_at11/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.25135.2.S1_x_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35510OsAffx.8277.2.S1_at1/115+21020180..21023083hypothetical protein
LOC_Os05g35520Os.20865.1.S1_at11/115+21029401..21034212deoxynucleoside kinase family, putative, expressed
LOC_Os05g35530Os.6302.1.S1_x_at10/115+21037631..21043658expressed protein
LOC_Os05g35530Os.6302.2.S1_at8/115+21037631..21043658expressed protein
LOC_Os05g35540Os.10470.1.S1_s_at10/115+21043643..21046459expressed protein
LOC_Os05g35540Os.18211.1.S1_at1/115+21043643..21046459expressed protein
LOC_Os05g35550OsAffx.4530.1.S1_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35550OsAffx.4530.1.S1_x_at11/115+21046706..21047002hypothetical protein
LOC_Os05g35560OsAffx.14977.1.S1_at11/115+21048639..21049271hypothetical protein
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0005524molecular_functionATP binding
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20865.1.S1_at--575--1271Chr05:21033748..21033772 (25 bp)
AGATCATGCTTCCTCACAAAGGCGG
LOC_Os05g35520
Os.20865.1.S1_at--83--1431Chr05:21033792..21033816 (25 bp)
AGAAACCCTTTCTCAGGATCTGCTA
LOC_Os05g35520
Os.20865.1.S1_at--659--1971Chr05:21033910..21033934 (25 bp)
ACTGACCTTGTAAATGGGCCTATGC
LOC_Os05g35520
Os.20865.1.S1_at--810--6271Chr05:21033965..21033989 (25 bp)
GATGTAAGATAGTCTGCCACCGCAT
LOC_Os05g35520
Os.20865.1.S1_at--91--4311Chr05:21034020..21034044 (25 bp)
CCTTTCCGAGTTCCATGTTTTGTAG
LOC_Os05g35520
Os.20865.1.S1_at--304--10411Chr05:21034037..21034061 (25 bp)
TTTTGTAGTAGCGTCAGCTTCCGTT
LOC_Os05g35520
Os.20865.1.S1_at--975--3631Chr05:21034054..21034078 (25 bp)
CTTCCGTTTGTCTGAGTTCTGGTAT
LOC_Os05g35520
Os.20865.1.S1_at--86--6631Chr05:21034091..21034115 (25 bp)
GTTGGTTGCTGACTACATTCTGTTA
LOC_Os05g35520
Os.20865.1.S1_at--568--6371Chr05:21034119..21034143 (25 bp)
GATCCGGAACTCTTTGACATTTCTG
LOC_Os05g35520
Os.20865.1.S1_at--551--5571Chr05:21034145..21034169 (25 bp)
GAAAGATGCTTCAGTACTTGCCGTT
LOC_Os05g35520
Os.20865.1.S1_at--787--7011Chr05:21034158..21034182 (25 bp)
GTACTTGCCGTTTGTTTGTCATCAA
LOC_Os05g35520
Target Sequence 
AGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAAC
TTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTC
TCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGNTAGCCACTGATGTAAGATAGTCTGCCACCGC
ATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTG
AGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAA
AGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis