Browse Element(s) Details


Os.21123.1.S1_at

Description gb:AK107570.1
DB_XREF= gi:32992779
TID=Os.21123.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1402_H07.11 (OJ1402_H07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D02, full insert sequence.
FL= gb:AK107570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6381011/11Starch binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005982biological_processstarch metabolism
GO:0005983biological_processstarch catabolism
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0003824molecular_functioncatalytic activity
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21123.1.S1_at--1133--10371Chr01:37350027..37350051 (25 bp)
TTTTCTTCAATGACATGGCCTGGAC
LOC_Os01g63810
Os.21123.1.S1_at--836--8531Chr01:37350047..37350071 (25 bp)
TGGACCAGGAAAGCCCTGCAGCAGT
LOC_Os01g63810
Os.21123.1.S1_at--371--1531Chr01:37350066..37350090 (25 bp)
AGCAGTTGCTCCGAAGCCTTGGTTT
LOC_Os01g63810
Os.21123.1.S1_at--282--4311Chr01:37350082..37350106 (25 bp)
CCTTGGTTTCCAAATCGGCACGAGA
LOC_Os01g63810
Os.21123.1.S1_at--175--5571Chr01:37350188..37350212 (25 bp)
GAAAGCTTCTACATGCTGCAAACCT
LOC_Os01g63810
Os.21123.1.S1_at--944--1791Chr01:37350248..37350272 (25 bp)
ACCCTTTACGTTGCTAAGGTCTGCA
LOC_Os01g63810
Os.21123.1.S1_at--1054--2891Chr01:37350263..37350287 (25 bp)
AAGGTCTGCAACACCAGCAGTACTT
LOC_Os01g63810
Os.21123.1.S1_at--348--1531Chr01:37350278..37350302 (25 bp)
AGCAGTACTTGTTAGCAGTGCAAAA
LOC_Os01g63810
Os.21123.1.S1_at--1007--2611Chr01:37350509..37350533 (25 bp)
AACCACATGTACTTTAATCCACCAG
LOC_Os01g63810
Os.21123.1.S1_at--314--3031Chr01:37350524..37350548 (25 bp)
AATCCACCAGATTTACGTTCATTTC
LOC_Os01g63810
Os.21123.1.S1_at--1055--10331Chr01:37350535..37350560 (25 bp)
TTTACGTTCATTTCTCATCATTTCA
LOC_Os01g63810
Target Sequence 
TTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGA
AAAACATGAANTAAGCATCAGAGACGCTGNACCTGCAGTTTTGGCTGATCACANCGGTCTCGCGGTGCCTTCANTTCAAA
ACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTA
AGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACC
AGTAATGACTAAGCTNACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTA
GAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCACACGTATA
AGCTCAACCACATGTACTTTAATCCACCAGATTTACGTTCATTTCTCATCATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis