Browse Element(s) Details


Os.21192.2.S1_at

Description gb:AK060930.1
DB_XREF= gi:32970948
TID=Os.21192.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.35 (B1144G04.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A10, full insert sequence.
FL= gb:AK106055.1 gb:AK060930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4882010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21192.2.S1_at--314--4991Chr01:28340407..28340431 (25 bp)
GCATGAGGTATAACCAGGCGCCACT
LOC_Os01g48820
Os.21192.2.S1_at--755--351Chr01:28340416..28340440 (25 bp)
ATAACCAGGCGCCACTGCTGACGCG
LOC_Os01g48820
Os.21192.2.S1_at--952--8931Chr01:28340434..28340458 (25 bp)
TGACGCGCCTTCTCGTGGCACTCTT
LOC_Os01g48820
Os.21192.2.S1_at--505--9451Chr01:28340467..28340491 (25 bp)
TCGGCTCATGGTTCAGGATACTCTA
LOC_Os01g48820
Os.21192.2.S1_at--447--2411Chr01:28340510..28340534 (25 bp)
AAAACTGAGAGATTTCAGCATTCAG
LOC_Os01g48820
Os.21192.2.S1_at--344--7931Chr01:28340538..28340562 (25 bp)
GGATTGATTCATCGTCAGTTCGTCA
LOC_Os01g48820
Os.21192.2.S1_at--505--511Chr01:28340548..28340572 (25 bp)
ATCGTCAGTTCGTCAGACTCTTATC
LOC_Os01g48820
Os.21192.2.S1_at--784--1371Chr01:28340562..28340586 (25 bp)
AGACTCTTATCACAATTTCCTTCTC
LOC_Os01g48820
Os.21192.2.S1_at--820--10371Chr01:28340609..28340633 (25 bp)
TTTTTTGTCTTGGTCATGTTCACCT
LOC_Os01g48820
Os.21192.2.S1_at--893--7811NONE
GGTCATGTTCACCTGACAGTCACAA
NONE
Os.21192.2.S1_at--904--2191Chr01:28340641..28340665 (25 bp)
ACAACTCACAACTTCATGCAAATCA
LOC_Os01g48820
Target Sequence 
GCATGAGGTATAACCAGGCGCCACTGCTGACGCGCCTTCTCGTGGCACTCTTCCCCTTCCTCGGCTCATGGTTCAGGATA
CTCTAAATTTGAGAAGAAGAAGAAAAACTGAGAGATTTCAGCATTCAGAATGGATTGATTCATCGTCAGTTCGTCAGACT
CTTATCACAATTTCCTTCTCCCGGTCAGGNGCACTTTGCCTCTTTTTTGTCTTGGTCATGTTCACCTGACAGTCACAACT
CACAACTTCATGCAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21192.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis