Browse Element(s) Details


Os.212.1.S1_at

Description gb:AK071739.1
DB_XREF= gi:32981762
TID=Os.212.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108I11, full insert sequence.
FL= gb:AK071739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1695011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.212.1.S1_at--163--1931Chr01:9688335..9688359 (25 bp)
ACGGAAATGCCGTGCCGGCACAGGT
LOC_Os01g16950
Os.212.1.S1_at--94--511Chr01:9688374..9688398 (25 bp)
ATCGTGCCGTGGCTCAAGATGCACA
LOC_Os01g16950
Os.212.1.S1_at--524--7531Chr01:9688382..9688406 (25 bp)
GTGGCTCAAGATGCACAGCTCCTGC
LOC_Os01g16950
Os.212.1.S1_at--1149--10691Chr01:9688545..9688569 (25 bp)
TTGCCGGCCGTGATGCAGGAGCTCA
LOC_Os01g16950
Os.212.1.S1_at--499--5911Chr01:9688706..9688730 (25 bp)
GAGCTCATGGTTTTGCAACTTTGAC
LOC_Os01g16950
Os.212.1.S1_at--851--2031Chr01:9688723..9688747 (25 bp)
ACTTTGACAATGTACATAATCCGGG
LOC_Os01g16950
Os.212.1.S1_at--527--7371Chr01:9688764..9688788 (25 bp)
GTGACTGGCTTTGGTGCCAATGGAA
LOC_Os01g16950
Os.212.1.S1_at--259--10851Chr01:9688774..9688798 (25 bp)
TTGGTGCCAATGGAACTTCATTTTT
LOC_Os01g16950
Os.212.1.S1_at--811--9291Chr01:9688806..9688830 (25 bp)
TCCCCTTTCTTTAGCAATCATCTTG
LOC_Os01g16950
Os.212.1.S1_at--740--3071Chr01:9688821..9688845 (25 bp)
AATCATCTTGTGATATATCCCATGA
LOC_Os01g16950
Os.212.1.S1_at--354--10471Chr01:9688848..9688872 (25 bp)
TTAATATACAATTTGCGTTCGGCGG
LOC_Os01g16950
Target Sequence 
ACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTG
CCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCC
GGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGGAGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGC
ATCCTCTCCCAGCCGTCGCCGGCGTCGACTTCCGGCAGCAGCTCGCACGCGCAGCAGCACAGCGACGAGTGATNGACGAC
TNCAGGATNGGTCNNCGGTNCACCGGCGGTNCTNGCTNGCTCCGGNCGACCGGCGGANGAGCTCATGGTTTTGCAACTTT
GACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTC
CCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis