Browse Element(s) Details


Os.21241.1.S1_at

Description gb:AK068368.1
DB_XREF= gi:32978386
TID=Os.21241.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1341_A08.33 (OJ1341_A08.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149E04, full insert sequence.
FL= gb:AK068368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1409011/11MAP kinase-activating protein C22orf5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14070OsAffx.28437.3.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.1.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.2.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.3.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070Os.7975.1.S1_x_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.31576.1.S1_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14080Os.29859.1.S1_at11/117+8031063..8032877Transferase family protein, expressed
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21241.1.S1_at--1042--5071Chr07:8040502..8040522 (21 bp)
GCACCAGTTTGCACCAACATATCAT
LOC_Os07g14090
Os.21241.1.S1_at--290--10011Chr07:8040570..8040594 (25 bp)
TAGCTCTGCCAGTGTTGTGTCAACA
LOC_Os07g14090
Os.21241.1.S1_at--997--1451Chr07:8040615..8040639 (25 bp)
AGAAGTCTCTGTCGTGGACTCGAAA
LOC_Os07g14090
Os.21241.1.S1_at--35--5571Chr07:8040636..8040660 (25 bp)
GAAAGCTCCGTTGGCATCAGTCATC
LOC_Os07g14090
Os.21241.1.S1_at--493--8191Chr07:8040702..8040726 (25 bp)
GGAAGAAACTGTTGCCCCTTCAGAG
LOC_Os07g14090
Os.21241.1.S1_at--485--311Chr07:8040729..8040753 (25 bp)
ATACGACCTCTCAAACTTGGTTGAT
LOC_Os07g14090
Os.21241.1.S1_at--215--2571Chr07:8040758..8040782 (25 bp)
AACTGTCCAATTACTCTGCTGAGGT
LOC_Os07g14090
Os.21241.1.S1_at--501--8891Chr07:8040777..8040801 (25 bp)
TGAGGTCCCTGCAATTCCTGATGTG
LOC_Os07g14090
Os.21241.1.S1_at--752--1651Chr07:8040850..8040874 (25 bp)
AGCGCTCACGAGTTGTTCATAGATT
LOC_Os07g14090
Os.21241.1.S1_at--2--7871Chr07:8040885..8040909 (25 bp)
GGTATCCTTGTAATCCTTTGTTTCT
LOC_Os07g14090
Os.21241.1.S1_at--654--1071Chr07:8040930..8040954 (25 bp)
AGGGACGTGCTGATATCTTTGGTTC
LOC_Os07g14090
Target Sequence 
GCACCAGTTTGCACCAACATATCATGAATATGTGCTCTACAGTAACGAGGAAGAGGATGAACCGACAAAATATAGCTCTG
CCAGTGTTGTGTCAACAGTACAGGACATACAGCTGGTAGAAGTCTCTGTCGTGGACTCGAAAGCTCCGTTGGCATCAGTC
ATCCTAACACATGAGGCAGATNAAACAATGCCCTCCCATGGCATGGAAGAAACTGTTGCCCCTTCAGAGCCATACGACCT
CTCAAACTTGGTTGATGTAGAACTGTCCAATTACTCTGCTGAGGTCCCTGCAATTCCTGATGTGGGGAAACAATGATATT
GTGTGATATATATCCGTCAGATGTAAATGGGTAGCGCTCACGAGTTGTTCATAGATTACACTGTAAAGGTATCCTTGTAA
TCCTTTGTTTCTGCCAATTTTTCCCCGTTGCTAGGGACGTGCTGATATCTTTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis