Browse Element(s) Details


Os.213.1.S1_at

Description gb:AK103164.1
DB_XREF= gi:32988373
TID=Os.213.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121D22, full insert sequence.
FL= gb:AK103465.1 gb:AK059579.1 gb:AK100799.1 gb:AK103164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1696011/11Pyruvate kinase, cytosolic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.213.1.S1_at--152--8171Chr01:9691803..9691827 (25 bp)
GGAACAACTGCTAGGCTGGTGGCCA
LOC_Os01g16960
Os.213.1.S1_at--780--6571Chr01:9691759..9691783 (25 bp)
GATTCTGTCCGTCGTGGTTCCTGAG
LOC_Os01g16960
Os.213.1.S1_at--119--8911Chr01:9691738..9691762 (25 bp)
TGAGCTGAAACAGACCGACTCCTTC
LOC_Os01g16960
Os.213.1.S1_at--921--6111Chr01:9691661..9691685 (25 bp)
GAGTGATCCCGATGCTGAGTGCAGC
LOC_Os01g16960
Os.213.1.S1_at--325--371Chr01:9691503..9691527 (25 bp)
ATCAAGCTCCTGACAGCGAACTAGT
LOC_Os01g16960
Os.213.1.S1_at--226--8271Chr01:9691478..9691502 (25 bp)
GGCAGACGGCAGTTAATCCACACCA
LOC_Os01g16960
Os.213.1.S1_at--471--3031Chr01:9691464..9691488 (25 bp)
AATCCACACCATTTTGCTCGGAGGA
LOC_Os01g16960
Os.213.1.S1_at--485--111Chr01:9691423..9691447 (25 bp)
ATTCTTACTTACCACGCATATCTAT
LOC_Os01g16960
Os.213.1.S1_at--569--8491Chr01:9691378..9691402 (25 bp)
TGGCATTTGCATTCAGGTGCACCTT
LOC_Os01g16960
Os.213.1.S1_at--551--10591Chr01:9691355..9691379 (25 bp)
TTCGGTGTTTGCTGTTCATGGGTTA
LOC_Os01g16960
Os.213.1.S1_at--283--10491Chr01:9691317..9691341 (25 bp)
TTAAATTCGTTATTGCTACCGCAGC
LOC_Os01g16960
Target Sequence 
GGAACAACTGCTAGGCTGGTGGCCAAGTACAGGCCATCCATGCCGATTCTGTCCGTCGTGGTTCCTGAGCTGAAACAGAC
CGACTCCTTCGACTGGACCTGCAGCGACGAAGCTCCTGCGCGGCACAGCCTCATCGTCAGGGGAGTGATCCCGATGCTGA
GTGCAGCCACTGCCAAGGCCTTCGACAACGAAGCCACTGAAGAAGCTCTCGGGTTCGCCATCAGCAACGCCAAGGCGATG
GGGCTCTGCAACTCCGGTGAGTCNGTNGTCGCCCTCCACCGGATCGGAACTGCATCTGTCATCAAGCTCCTGACAGCGAA
CTAGTGGCAGACGGCAGTTAATCCACACCATTTTGCTCGGAGGAAAATTTTTGCTGGGGGATTCTTACTTACCACGCATA
TCTATAGCTTTTGTTGCCATGATAGTGGCATTTGCATTCAGGTGCACCTTCGGTGTTTGCTGTTCATGGGTTAACCATTG
AAACAGTTAAATTCGTTATTGCTACCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis