Browse Element(s) Details


Os.21300.2.S1_x_at

Description gb:AK111393.1
DB_XREF= gi:32996602
TID=Os.21300.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C07, full insert sequence.
FL= gb:AK111393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g259748/11expressed protein
LOC_Os10g357701/11expressed protein
LOC_Os06g261901/11hypothetical protein
LOC_Os03g391101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein
LOC_Os05g25990NANA5+15018231..15019229hypothetical protein
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21300.2.S1_x_at--250--8152Chr10:18802850..18802932 (24 bp)
GGAAACCATGGCTGTAATCTTCTCC
LOC_Os10g35770
Os.21300.2.S1_x_at--337--5391Chr05:15015836..15015860 (25 bp)
GAAGCACTCATAGAGGTTCTCAGTT
LOC_Os05g25974
Os.21300.2.S1_x_at--647--6551Chr05:15015701..15015725 (25 bp)
GATTAGTCTTCTATCTCCTTGGATT
LOC_Os05g25974
Os.21300.2.S1_x_at--235--4191Chr05:15015672..15015696 (25 bp)
CCCTCCCAGTGTATAATGCCATTTC
LOC_Os05g25974
Os.21300.2.S1_x_at--992--31Chr05:15015635..15015659 (25 bp)
ATTGTGCCAGTTGAATCTATCCATC
LOC_Os05g25974
Os.21300.2.S1_x_at--772--8573Chr05:15078947..15078971 (25 bp)
TGGATTGTAGTCTCATCCTCCATGA
NONE
Os.21300.2.S1_x_at--1111--9613Chr05:15078959..15079047 (25 bp)
TCATCCTCCATGATCCACAAGTGAG
NONE
Os.21300.2.S1_x_at--193--8451Chr05:15015495..15015519 (25 bp)
TGGCCATCCCATGAAGGTTAACCTC
LOC_Os05g25974
Os.21300.2.S1_x_at--569--4911Chr01:24607856..24607880 (25 bp)
GCTTGTTTGATACTTTCGTTACTAA
NONE
Os.21300.2.S1_x_at--253--6771Chr01:24607873..24607897 (25 bp)
GTTACTAATGCTATCGAGCCTCACT
NONE
Os.21300.2.S1_x_at--862--10152Chr01:24607884..24607908 (25 bp)
TATCGAGCCTCACTAATCTTGCAGT
NONE
Target Sequence 
GGAAACCATGGCTGTAATCTTCTCCAAAGATAAAATTTACAGTCAAGAATTTCTGCTTATTCAATTAAGAAGAATAGAAA
GAAGCACTCATAGAGGTTCTCAGTTACAATTTGGATGAAATGGATGCCACAACTAACAGTAATAAAATTGCTAGAACTAG
TTATGATTCATTTTCTTAGATACATTTTATCAGGACATAGTTATAGGTATCCATGGATTAGTCTTCTATCTCCTTGGATT
GCCCCCCTCCCAGTGTATAATGCCATTTCTTTTTTGGACAGATTGTGCCAGTTGAATCTATCCATCAAGGCCAAATCATG
AGCAACCAATTTTCCATGTATGAATGAAGAATTTACACTTTTTGGCTAAATGGATTGTAGTCTCATCCTCCATGATCCAC
AAGTGAGCAAGATGAATTACATGGCCATCCCATGAAGGTTAACCTCATTTTTATCAGTGAATTGAATTTTGAGGATAGTA
CTTCAGTACTTTGTTACCGCTAAAGAGGGATGCGTATAATGTAGTATTGTATTGCTTGTTTGATACTTTCGTTACTAATG
CTATCGAGCCTCACTAATCTTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21300.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis