Browse Element(s) Details


Os.21615.1.S1_at

Description gb:AK061211.1
DB_XREF= gi:32971229
TID=Os.21615.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acetyl transferase (P0410E01.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full insert sequence.
FL= gb:AK069226.1 gb:AK061211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4288011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed
LOC_Os01g42909NANA1+24742567..24743696hypothetical protein
LOC_Os01g42920NANA1+24747331..24749991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42934OsAffx.10633.1.S1_at1/111+24751060..24753178retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21615.1.S1_at--784--2651Chr01:24724938..24724962 (25 bp)
AAGCCAAGGATGTGCTCTCGACACG
LOC_Os01g42880
Os.21615.1.S1_at--599--5631Chr01:24724919..24724943 (25 bp)
GACACGGTTCCTCGATTGGATGAGC
LOC_Os01g42880
Os.21615.1.S1_at--776--7231Chr01:24724865..24724889 (25 bp)
GTCGCTGGATTACGGCACACTAGTC
LOC_Os01g42880
Os.21615.1.S1_at--445--2031Chr01:24724847..24724871 (25 bp)
ACTAGTCGTCACAGATTGGAGCCAT
LOC_Os01g42880
Os.21615.1.S1_at--132--1671Chr01:24724788..24724812 (25 bp)
AGCCGAGCTATGTGTTCACCCTGAA
LOC_Os01g42880
Os.21615.1.S1_at--749--8871Chr01:24724760..24724784 (25 bp)
TGATGTGAACATTGTGCCGTCCGTC
LOC_Os01g42880
Os.21615.1.S1_at--802--911Chr01:24724677..24724701 (25 bp)
AGGCTCAGCACTCCAAGGTTTTCGG
LOC_Os01g42880
Os.21615.1.S1_at--635--7051Chr01:24724625..24724649 (25 bp)
GTAACTTCGTGTTTATACGCCTACA
LOC_Os01g42880
Os.21615.1.S1_at--356--9471Chr01:24724574..24724598 (25 bp)
TCTGGTGTGTTGAATAGCCGCTTCT
LOC_Os01g42880
Os.21615.1.S1_at--645--1671Chr01:24724559..24724583 (25 bp)
AGCCGCTTCTTGAACTTGGTTACAA
LOC_Os01g42880
Os.21615.1.S1_at--723--1051Chr01:24724526..24724550 (25 bp)
AGGTGGATCGTGTTTGTATTCTGTA
LOC_Os01g42880
Target Sequence 
AAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTG
GATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTNGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTA
TGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAGCAGGGAATCA
GGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTT
CGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTT
ACAAATAAAACAAGGTGGATCGTGTTTGTATTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis