Browse Element(s) Details


Os.21861.1.S1_at

Description gb:AK070325.1
DB_XREF= gi:32980349
TID=Os.21861.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full insert sequence.
FL= gb:AK099134.1 gb:AK070325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0584011/11DNA topoisomerase I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein
LOC_Os08g05870OsAffx.17522.1.S1_at11/118+3154294..3158875Oxysterol-binding protein, expressed
LOC_Os08g05880Os.11715.2.S1_x_at11/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880OsAffx.30567.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed
LOC_Os08g05880Os.10162.1.S1_at1/118+3160418..3164209U3 small nucleolar ribonucleoprotein protein IMP4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0005634cellular_componentnucleus
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21861.1.S1_at--300--7351Chr08:3135732..3135756 (25 bp)
GTGCAAACGCCATGAAGTACCCATC
LOC_Os08g05840
Os.21861.1.S1_at--555--10371Chr08:3136093..3136117 (25 bp)
TTTTCGTGGGCAATGGACGTCGACC
LOC_Os08g05840
Os.21861.1.S1_at--149--1371Chr08:3136144..3136168 (25 bp)
AGAGCATTGGCTACTGGTCATCCGG
LOC_Os08g05840
Os.21861.1.S1_at--532--8592Chr08:3136158..3136182 (25 bp)
TGGTCATCCGGCCTGTAGTAAAGTT
LOC_Os08g05840
Os.21861.1.S1_at--124--7051Chr08:3136175..3136199 (25 bp)
GTAAAGTTGATCCAGCTTCCAGTCC
LOC_Os08g05840
Os.21861.1.S1_at--370--8691Chr08:3136201..3136225 (25 bp)
TGTCCCGGACACTAATTTGCAGCTA
LOC_Os08g05840
Os.21861.1.S1_at--570--7431Chr08:3136242..3136266 (25 bp)
GTGTTTGTTTTTGAAGTCCCCTGCT
LOC_Os08g05840
Os.21861.1.S1_at--417--2851Chr08:3136255..3136279 (25 bp)
AAGTCCCCTGCTCCTGGAAAGAAGG
LOC_Os08g05840
Os.21861.1.S1_at--755--1791Chr08:3136284..3136308 (25 bp)
ACCCGGCATTCTCATTGTAGGCTTT
LOC_Os08g05840
Os.21861.1.S1_at--580--11Chr08:3136315..3136339 (25 bp)
CTTTTACTACTTGTTGGTGCCTTTG
LOC_Os08g05840
Os.21861.1.S1_at--828--491Chr08:3136342..3136366 (25 bp)
ATCGGTCCTCAAGTTCTGTATGCAT
LOC_Os08g05840
Target Sequence 
GTGCAAACGCCATGAAGTACCCATCGAGAAGATTTTCAACAAATCACTCATTGCGAAATTTTCGTGGGCAATGGACGTCG
ACCCNGATTTCAGATTTTAAGAGGGTANAAGAGCATTGGCTACTGGTCATCCGGCCTGTAGTAAAGTTGATCCAGCTTCC
AGTCCTTGTCCCGGACACTAATTTGCAGCTAGGAAAGGAAGAGCTCGGTGTTTGTTTTTGAAGTCCCCTGCTCCTGGAAA
GAAGGAAGCACCCGGCATTCTCATTGTAGGCTTTTTTTTTCTTTTACTACTTGTTGGTGCCTTTGCCATCGGTCCTCAAG
TTCTGTATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis