Browse Element(s) Details


Os.21862.1.S1_at

Description gb:AK122136.1
DB_XREF= gi:37991782
TID=Os.21862.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135J16, full insert sequence.
FL= gb:AK060251.1 gb:AK122136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1488011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14860Os.15199.1.S1_at11/118+8948951..8953293Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os08g14870OsAffx.29207.2.S1_at11/118+8957450..8957785hypothetical protein
LOC_Os08g14870OsAffx.29207.1.S1_x_at1/118+8957450..8957785hypothetical protein
LOC_Os08g14880Os.21862.1.S1_at11/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880Os.35093.1.A1_x_at3/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880OsAffx.29842.3.S1_x_at1/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14890OsAffx.5818.1.S1_at11/118+8968896..8970845expressed protein
LOC_Os08g14900NANA8+8971186..8972365expressed protein
LOC_Os08g14910OsAffx.29209.1.S1_at10/118+8976912..8979045hypothetical protein
LOC_Os08g14920NANA8+8984466..8984795hypothetical protein
LOC_Os08g14930OsAffx.29210.1.S1_at11/118+8986307..8987469hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21862.1.S1_at--417--4291Chr08:8964060..8964084 (25 bp)
CCTCATGCAGCGACAGTGGATCTAA
LOC_Os08g14880
Os.21862.1.S1_at--629--1651Chr08:8964068..8964092 (25 bp)
AGCGACAGTGGATCTAACCCGCGGC
LOC_Os08g14880
Os.21862.1.S1_at--1075--10591Chr08:8964250..8964274 (25 bp)
TTCTGCTCCCTTGTGGCACTGGTTG
LOC_Os08g14880
Os.21862.1.S1_at--713--4311Chr08:8964258..8964282 (25 bp)
CCTTGTGGCACTGGTTGCGGTCGCT
LOC_Os08g14880
Os.21862.1.S1_at--778--6731Chr08:8964316..8964340 (25 bp)
GTTCTTCTCCGAGCAGCAGCGATGG
LOC_Os08g14880
Os.21862.1.S1_at--2--4631Chr08:8964334..8964358 (25 bp)
GCGATGGCTCTCTATTCCCTGAGAA
LOC_Os08g14880
Os.21862.1.S1_at--204--2491Chr08:8964390..8964414 (25 bp)
AACACCACTCTGCTCTAATGACAGA
LOC_Os08g14880
Os.21862.1.S1_at--8--171Chr08:8964419..8964443 (25 bp)
ATTATTTCTCAAATCGCAATGCACT
LOC_Os08g14880
Os.21862.1.S1_at--1147--4111Chr08:8964433..8964457 (25 bp)
CGCAATGCACTTTATTTATTTCTCA
LOC_Os08g14880
Os.21862.1.S1_at--517--10351Chr08:8964447..8964471 (25 bp)
TTTATTTCTCAAATCGCAATGCACT
LOC_Os08g14880
Os.21862.1.S1_at--149--10831Chr08:8964506..8964530 (25 bp)
TTGTCGTTGTTGTTCGTCACTTTAT
LOC_Os08g14880
Target Sequence 
CCTCATGCAGCGACAGTGGATCTAACCCGCGGCGGCGGNGGCGGCTTTCGTGCTGCTGCTCCCCTGCTGCCGGCGGNGGC
CACGGTTGCTGCTACTCCCCTGCGCCGGCGCAGCGGTGGCTGCTGCTCCCATGCNACGTCGGCTACCGCGGCTGGTGCTC
CCCTGCGGTGCCGGCGGCNGCAGCTGCTGCTTCTGCTCCCTTGTGGCACTGGTTGCGGTCGCTGCTCCCCAACAGAGCCG
GTGGCTGCTGCTGCTCGTTCTTCTCCGAGCAGCAGCGATGGCTCTCTATTCCCTGAGAAGCGGCAGCAGCTCCTTCTTCC
CCAATCGAGCAACACCACTCTGCTCTAATGACAGATAAGATTATTTCTCAAATCGCAATGCACTTTATTTATTTCTCAAA
TCGCAATGCACTTTATCTGGACNTGGAAAGAACGAGAGCAATTTTGTTGTCGTTGTTGTTCGTCACTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis