Browse Element(s) Details


Os.2216.1.S1_at

Description gb:U37936.1
DB_XREF= gi:1235663
TID=Os.2216.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2216 (NCBI UniGene Cluster)
DEF=Oryza sativa clone pFDRSC61 novel calmodulin-like protein mRNA, complete cds.
PROD=novel calmodulin-like protein
FL= gb:AF231026.1 gb:U37936.1 gb:AK070889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5953011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59460OsAffx.11661.1.S1_x_at11/111+34724153..34724440hypothetical protein
LOC_Os01g59470OsAffx.23857.1.S1_at11/111+34725279..34726990hypothetical protein
LOC_Os01g59480OsAffx.11662.1.S1_at11/111+34728561..34729955hypothetical protein
LOC_Os01g59490Os.27966.1.S1_a_at11/111+34733225..34736049FAD-dependent oxidoreductase family protein, putative, expressed
LOC_Os01g59500Os.37510.1.S1_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_x_at11/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59500OsAffx.11663.1.S1_at10/111+34736075..34739419U3 small nucleolar RNA-associated protein 11, putative, expressed
LOC_Os01g59510Os.33770.1.S1_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59510Os.33770.1.S1_s_at11/111+34739702..34743837ribonuclease III family protein, putative, expressed
LOC_Os01g59520Os.52792.1.S1_at11/111+34743963..34747179expressed protein
LOC_Os01g59530Os.2216.1.S1_at11/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59530OsAffx.31569.1.S1_x_at1/111+34747839..34750523Calmodulin, putative, expressed
LOC_Os01g59540NANA1+34752667..34753898GRF zinc finger family protein
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2216.1.S1_at--89--6331Chr01:34749659..34749683 (25 bp)
GATGCGAAGTCTAGGGCAGAACCCA
LOC_Os01g59530
Os.2216.1.S1_at--239--7531Chr01:34749717..34749741 (25 bp)
GTGGACACGGACAGCAACGGCAACA
LOC_Os01g59530
Os.2216.1.S1_at--524--2571Chr01:34749732..34749756 (25 bp)
AACGGCAACATCGAATTCAAGGAGT
LOC_Os01g59530
Os.2216.1.S1_at--178--1611Chr01:34749805..34749829 (25 bp)
AGCTGAAGGAGGCATTCCGCGTCTT
LOC_Os01g59530
Os.2216.1.S1_at--296--4011Chr01:34749977..34749998 (22 bp)
CGTCAAGTGCATGATGGCCAAGAAG
LOC_Os01g59530
Os.2216.1.S1_at--317--5791Chr01:34750175..34750199 (25 bp)
GACGAAGAGTGCAGGGCCCTCCGCC
LOC_Os01g59530
Os.2216.1.S1_at--716--1631Chr01:34750213..34750237 (25 bp)
AGCGTGGCCAGAAGTGCGTGATCCT
LOC_Os01g59530
Os.2216.1.S1_at--1103--4651Chr01:34750228..34750252 (25 bp)
GCGTGATCCTGTAATAATTGAGCCA
LOC_Os01g59530
Os.2216.1.S1_at--783--10751Chr01:34750245..34750269 (25 bp)
TTGAGCCAGCACTGAGATTCTCATG
LOC_Os01g59530
Os.2216.1.S1_at--669--8891Chr01:34750268..34750292 (25 bp)
TGAGTCAATGAGCTACACGAATGAT
LOC_Os01g59530
Os.2216.1.S1_at--87--4671Chr01:34750328..34750352 (25 bp)
GCGTGTAGTATGATGCTCCACTGAA
LOC_Os01g59530
Target Sequence 
GATGCGAAGTCTAGGGCAGAACCCAACGGAGGCGGAGCTGCAGGACATGATCAGCGAGGTGGACACGGACAGCAACGGCA
ACATCGAATTCAAGGAGTTCCTGGGCCTGATGGCGCGCAAGCTGAGGGACAAGGACTCCGAGGAGGAGCTGAAGGAGGCA
TTCCGCGTCTTCGACAAGGACCAGAACGGTTTCATCTCTGCCACCGAGCTCCGCCACGTGATGGCCAACATCGGGGAGCG
GCTCACCGACGAGGAGGTCGGCGAGATGATCAGCGAGGCCGACGTCGACGGCGACGGGCAGATCAACTACGAGGAGTTCG
TCAAGTGCATGATGGCCAAGAAGAGGAGGAAGAGGATAGAGGAGAAGAGGGACCACGACGGCGGCAGCAGGACGAAGAGT
GCAGGGCCCTCCGCCGCGCCGGCGAGCAAGCGTGGCCAGAAGTGCGTGATCCTGTAATAATTGAGCCAGCACTGAGATTC
TCATGAGTCAATGAGCTACACGAATGATGTGTGTTGTTGTAAAATGGCAAAACAATTGTGTGGGCGTGTAGTATGATGCT
CCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis