Browse Element(s) Details


Os.22256.2.S1_at

Description gb:NM_185328.1
DB_XREF= gi:34897741
TID=Os.22256.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU031036(E60617) corresponds to a region of the predicted gene.~Similar to Human mRNA for KIAA0310 gene. (AB002308) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) EST AU031036(E60617) corresponds to a region of the predicted gene.~Similar to Human mRNA for KIAA0310 gene. (AB002308) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01620Os.31716.2.A1_at9/116+364316..366066GRAS family transcription factor containing protein, expressed
LOC_Os06g01630Os.22911.1.S1_a_at11/116+369096..373968pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650Os.22256.2.S1_x_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.1.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.2.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.1.S1_at3/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_x_at2/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_at2/116+386223..392012expressed protein
LOC_Os06g01660Os.44872.1.S1_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660Os.44872.2.S1_x_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670Os.23936.1.S1_at11/116+397679..402494myb family transcription factor, putative, expressed
LOC_Os06g01680Os.9729.3.S1_a_at11/116+402739..409270expressed protein
LOC_Os06g01690Os.32187.1.S1_at11/116+409926..412035Septum site-determining protein minD, putative, expressed
LOC_Os06g01700Os.19955.1.S1_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700Os.19955.1.S2_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710OsAffx.10379.1.A1_at10/116+415531..419161expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22256.2.S1_at--1097--6411Chr06:387559..387583 (25 bp)
GATCTCATCATCAGGTGCTTGCTAA
LOC_Os06g01650
Os.22256.2.S1_at--690--9511Chr06:387557..387581 (25 bp)
TCTCATCATCAGGTGCTTGCTAAAA
LOC_Os06g01650
Os.22256.2.S1_at--925--3551Chr06:387554..387578 (25 bp)
CATCATCAGGTGCTTGCTAAAACAT
LOC_Os06g01650
Os.22256.2.S1_at--501--9531Chr06:387549..387573 (25 bp)
TCAGGTGCTTGCTAAAACATTAAAT
LOC_Os06g01650
Os.22256.2.S1_at--41--2491Chr06:387534..387558 (25 bp)
AACATTAAATTCATCCGATCCCGGT
LOC_Os06g01650
Os.22256.2.S1_at--1007--9751Chr06:387529..387553 (25 bp)
TAAATTCATCCGATCCCGGTTTCGA
LOC_Os06g01650
Os.22256.2.S1_at--433--551Chr06:387522..387546 (25 bp)
ATCCGATCCCGGTTTCGAACTGCAT
LOC_Os06g01650
Os.22256.2.S1_at--872--6371Chr06:387518..387542 (25 bp)
GATCCCGGTTTCGAACTGCATGTCA
LOC_Os06g01650
Os.22256.2.S1_at--597--4251Chr06:387514..387538 (25 bp)
CCGGTTTCGAACTGCATGTCACAGT
LOC_Os06g01650
Os.22256.2.S1_at--1127--6831Chr06:387511..387535 (25 bp)
GTTTCGAACTGCATGTCACAGTAGT
LOC_Os06g01650
Os.22256.2.S1_at--1113--4991Chr06:387501..387525 (25 bp)
GCATGTCACAGTAGTTTTTGATTTG
LOC_Os06g01650
Target Sequence 
GATCTCATCATCAGGTGCTTGCTAAAACATTAAATTCATCCGATCCCGGTTTCGAACTGCATGTCACAGTAGTTTTTGAT
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22256.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis