Browse Element(s) Details


Os.2227.1.S1_at

Description gb:AF093570.1
DB_XREF= gi:3851589
TID=Os.2227.1
CNT=75
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.2227 (NCBI UniGene Cluster)
DEF=Oryza sativa 33 kDa secretory protein mRNA, complete cds.
PROD=33 kDa secretory protein
FL= gb:AF097724.1 gb:AK073888.1 gb:AF090872.1 gb:AF093570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0424011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2227.1.S1_at--590--2171Chr08:2057359..2057383 (25 bp)
ACACGCCGTTTGTGAGTGTTTACGC
LOC_Os08g04240
Os.2227.1.S1_at--425--7431Chr08:2057344..2057368 (25 bp)
GTGTTTACGCGTTAGCACAGTGCAC
LOC_Os08g04240
Os.2227.1.S1_at--947--10451Chr08:2057333..2057357 (25 bp)
TTAGCACAGTGCACGCGAGACCTAG
LOC_Os08g04240
Os.2227.1.S1_at--392--4591Chr08:2057296..2057320 (25 bp)
GCGCACGGTGCCTATCGGAGATAGT
LOC_Os08g04240
Os.2227.1.S1_at--727--8951Chr08:2057262..2057286 (25 bp)
TGACAAAACTTGCAACAGCGCTCAA
LOC_Os08g04240
Os.2227.1.S1_at--1107--131Chr08:2057224..2057248 (25 bp)
ATTACAGCAGCTGTTGGGCGCGCTA
LOC_Os08g04240
Os.2227.1.S1_at--97--9391Chr08:2057173..2057197 (25 bp)
TCGAGGCAGGCAGTCGTGCCACTAT
LOC_Os08g04240
Os.2227.1.S1_at--24--7291Chr08:2057158..2057182 (25 bp)
GTGCCACTATCGACATGTCCAAGTA
LOC_Os08g04240
Os.2227.1.S1_at--507--7031Chr08:2057136..2057160 (25 bp)
GTACACCAAGGTCACCATGCACTAA
LOC_Os08g04240
Os.2227.1.S1_at--1032--9871Chr08:2057097..2057121 (25 bp)
TACATAGGCTATGCGTACAATGCGA
LOC_Os08g04240
Os.2227.1.S1_at--868--10191Chr08:2057057..2057081 (25 bp)
TATATACGTCGTACCGTGTAGCAGT
LOC_Os08g04240
Target Sequence 
ACACGCCGTTTGTGAGTGTTTACGCGTTAGCACAGTGCACGCGAGACCTAGCGCCGCCAGCGTGCGCACGGTGCCTATCG
GAGATAGTGTCCAAGTTTGACAAAACTTGCAACAGCGCTCAAGGATGCCAGATTGATTACAGCAGCTGTTGGGCGCGCTA
CGAGATCTACCCCTTCTACTTCCCACTCGAGGCAGGCAGTCGTGCCACTATCGACATGTCCAAGTACACCAAGGTCACCA
TGCACTAAATAAATCTAGCATATACATAGGCTATGCGTACAATGCGATAATGCATACATACATATATACGTCGTACCGTG
TAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis