Browse Element(s) Details

Os.22279.1.S1_at

Description

gb:AK072554.1
DB_XREF= gi:32982577
TID=Os.22279.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22279 (NCBI UniGene Cluster)
UG_TITLE=MRNA for dihydrolipoamide acetyltransferase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128I09, full insert sequence.
FL= gb:AK072554.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30460	11/11	2-oxo acid dehydrogenases acyltransferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30420	OsAffx.15677.1.S1_at	11/11	6	+	17576000..17577928	pentatricopeptide, putative, expressed
LOC_Os06g30430	OsAffx.27882.1.S1_at	11/11	6	+	17583539..17585353	NB-ARC domain containing protein
LOC_Os06g30440	Os.13846.2.S1_at	11/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440	Os.13846.2.S1_x_at	10/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440	Os.13846.1.S1_at	9/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450	NA	NA	6	+	17592384..17592983	hypothetical protein
LOC_Os06g30460	Os.22279.1.S1_at	11/11	6	+	17596802..17608674	2-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460	Os.22279.3.S1_x_at	9/11	6	+	17596802..17608674	2-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470	OsAffx.4972.1.S1_at	8/11	6	+	17608800..17611799	expressed protein
LOC_Os06g30480	Os.27351.1.S1_x_at	8/11	6	+	17616360..17617969	expressed protein
LOC_Os06g30480	OsAffx.24778.1.S1_s_at	1/11	6	+	17616360..17617969	expressed protein
LOC_Os06g30490	OsAffx.27883.1.S1_at	11/11	6	+	17625945..17626533	hypothetical protein
LOC_Os06g30500	OsAffx.27884.1.S1_at	11/11	6	+	17629607..17631315	Cytochrome P450 family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0005739	cellular_component	mitochondrion
GO:0004742	molecular_function	dihydrolipoyllysine-residue acetyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22279.1.S1_at--138--357	1	Chr06:17597995..17598094 (25 bp)	CATCAATCCTCCTCAGTCTGGAATT	LOC_Os06g30460
Os.22279.1.S1_at--579--115	2	Chr08:3227180..3227283 (25 bp)	AGTCTGGAATTCTTGCTGTTGGGCG	NONE
Os.22279.1.S1_at--216--977	1	Chr06:17597950..17597974 (25 bp)	TAAGATTATCGAGCCTGTGGTGGAC	LOC_Os06g30460
Os.22279.1.S1_at--149--301	1	Chr06:17597805..17597829 (25 bp)	AATGAGCTTGACATTGTCCGCTGAC	LOC_Os06g30460
Os.22279.1.S1_at--141--725	1	Chr06:17597790..17597814 (25 bp)	GTCCGCTGACCATCGTGTATTTGAT	LOC_Os06g30460
Os.22279.1.S1_at--1095--141	1	Chr06:17597106..17597130 (25 bp)	AGAAAAATCTTTCCCATGCAGCTCG	LOC_Os06g30460
Os.22279.1.S1_at--478--1051	1	Chr06:17597069..17597093 (25 bp)	TTCACCTCCAGCACGTACAAAAGTA	LOC_Os06g30460
Os.22279.1.S1_at--597--125	1	Chr06:17596947..17596971 (25 bp)	AGATACAGTGCCATTTCGTCTTTAT	LOC_Os06g30460
Os.22279.1.S1_at--603--753	1	Chr06:17596922..17596946 (25 bp)	GTGGCTGTGCAACATTTAATCCTTT	LOC_Os06g30460
Os.22279.1.S1_at--1080--637	1	Chr06:17596893..17596917 (25 bp)	GATCCCGTTGTTTCATGAGTATTTC	LOC_Os06g30460
Os.22279.1.S1_at--554--19	1	Chr06:17596873..17596897 (25 bp)	ATTTCTAGCTGACGGAGCTCGCTCA	LOC_Os06g30460

Target Sequence

CATCAATCCTCCTCAGTCTGGAATTCTTGCTGTTGGGCGTGGTAATAAGATTATCGAGCCTGTGGTGGACAGTGATGGAA
CCGAGAAGGCTACAGTGGTTACAAAAATGAGCTTGACATTGTCCGCTGACCATCGTGTATTTGATGGTCAAGTAGGAGGC
AAGTTTTTCACAGAGTTGTCACAGAATTTTGGTGACATTAGGAGACTGCTATTGTAAATGAAAGTTAGTACTAATCGTGC
TTTCAAATATTCTGTTGGAAAAAGGTTGGCCAAGAAAAATCTTTCCCATGCAGCTCGGAGCTTGGTTGCTTCACCTCCAG
CACGTACAAAAGTAACCAATTATTTTTTATTTTTTTAATAAGGTTAAATCTGCATTTCCAAGTTTTTTTTCTTAATTAAT
AATACTGGGATTAATGCCCCAAGAATTTTGCAGATACAGTGCCATTTCGTCTTTATGTGGCTGTGCAACATTTAATCCTT
TATTAGATCCCGTTGTTTCATGAGTATTTCTAGCTGACGGAGCTCGCTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis