Browse Element(s) Details


Os.22279.3.S1_x_at

Description gb:D21068.1
DB_XREF= gi:413914
TID=Os.22279.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22279 (NCBI UniGene Cluster)
UG_TITLE=MRNA for dihydrolipoamide acetyltransferase, partial cds
DEF=Oryza sativa mRNA for dihydrolipoamide acetyltransferase, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g304609/112-oxo acid dehydrogenases acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450NANA6+17592384..17592983hypothetical protein
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein
LOC_Os06g30480Os.27351.1.S1_x_at8/116+17616360..17617969expressed protein
LOC_Os06g30480OsAffx.24778.1.S1_s_at1/116+17616360..17617969expressed protein
LOC_Os06g30490OsAffx.27883.1.S1_at11/116+17625945..17626533hypothetical protein
LOC_Os06g30500OsAffx.27884.1.S1_at11/116+17629607..17631315Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22279.3.S1_x_at--1155--8511Chr06:17606182..17606206 (25 bp)
TGGACATTGGGCGATGCGTTTCTTC
LOC_Os06g30460
Os.22279.3.S1_x_at--969--31Chr06:17606177..17606201 (25 bp)
ATTGGGCGATGCGTTTCTTCTTCAA
LOC_Os06g30460
Os.22279.3.S1_x_at--327--4631NONE
GCGTTTCTTCTTCAAGGCCTTCATA
NONE
Os.22279.3.S1_x_at--846--2951Chr06:17605843..17605866 (24 bp)
AAGGCCTTCATATCTAGCGTCACTG
LOC_Os06g30460
Os.22279.3.S1_x_at--1128--10151Chr06:17605833..17605857 (25 bp)
TATCTAGCGTCACTGGGCAGACATT
LOC_Os06g30460
Os.22279.3.S1_x_at--588--8251Chr06:17605758..17605842 (25 bp)
GGCAGACATTACAAGGTTCCCATGG
LOC_Os06g30460
Os.22279.3.S1_x_at--1022--6691Chr06:17605743..17605767 (25 bp)
GTTCCCATGGAAATTCGTTGGTTAT
LOC_Os06g30460
Os.22279.3.S1_x_at--823--5591Chr06:17605734..17605758 (25 bp)
GAAATTCGTTGGTTATCCTCAACAG
LOC_Os06g30460
Os.22279.3.S1_x_at--198--8551NONE
TGGTTATCCTCAACAGGGTTTCCTC
NONE
Os.22279.3.S1_x_at--158--9611Chr06:17604504..17604528 (25 bp)
TCATCTGGTGGTTGGGATGCCTGCA
LOC_Os06g30460
Os.22279.3.S1_x_at--225--10151Chr06:17604383..17604502 (25 bp)
TATCCCCTACTATGAATCAAGGTAA
LOC_Os06g30460
Target Sequence 
TGGACATTGGGCGATGCGTTTCTTCTTCAAGGCCTTCATATCTAGCGTCACTGGGCAGACATTACAAGGTTCCCATGGAA
ATTCGTTGGTTATCCTCAACAGGGTTTCCTCCTCATCTGGTGGTTGGGATGCCTGCANTATCCCCTACTATGAATCAAGG
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22279.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis