Browse Element(s) Details


Os.22413.1.S1_at

Description gb:AK102189.1
DB_XREF= gi:32987398
TID=Os.22413.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086P22, full insert sequence.
FL= gb:AK071708.1 gb:AK102189.1 gb:AK060174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5907010/11phosphatidic acid phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59040Os.3409.1.S1_at11/113+33544237..33551375Squalene synthetase, putative, expressed
LOC_Os03g59050Os.12218.1.S1_at11/113+33551445..33556713ATP-dependent RNA helicase An3, putative, expressed
LOC_Os03g59060Os.9183.1.S1_at11/113+33560904..33565466Serine/threonine protein phosphatase PP2A catalytic subunit, putative, expressed
LOC_Os03g59070Os.22413.1.S1_at10/113+33566308..33569219phosphatidic acid phosphatase family protein, putative, expressed
LOC_Os03g59080Os.22872.1.S1_at11/113+33570865..33575781acyl-activating enzyme 18, putative, expressed
LOC_Os03g59090Os.47706.1.S1_at11/113+33577546..33580082cell death suppressor protein Lls1 homolog, putative, expressed
LOC_Os03g59100OsAffx.25764.2.S1_at11/113+33584044..33586453Rieske domain containing protein, expressed
LOC_Os03g59110OsAffx.25764.1.S1_at11/113+33588284..33592689Rieske domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042578molecular_functionphosphoric ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22413.1.S1_at--785--8491Chr03:33566849..33566873 (25 bp)
TGGCTTCTACCGGTGATGTGCAACA
LOC_Os03g59070
Os.22413.1.S1_at--447--2451Chr03:33566828..33566852 (25 bp)
AACACCCTGGGCATTCCTATTGTAT
LOC_Os03g59070
Os.22413.1.S1_at--457--8771Chr03:33566808..33566832 (25 bp)
TGTATCAACCTGCTATGTTCCAGCG
LOC_Os03g59070
Os.22413.1.S1_at--506--8811Chr03:33566793..33566817 (25 bp)
TGTTCCAGCGCTGAAGGCTTCCGAA
LOC_Os03g59070
Os.22413.1.S1_at--479--5391Chr03:33566745..33566769 (25 bp)
GAAGCAGGGCGGTTATCTCCAGAAG
LOC_Os03g59070
Os.22413.1.S1_at--361--8371Chr03:33566697..33566721 (25 bp)
GGCGTACGATGTGGACACCGGCATA
LOC_Os03g59070
Os.22413.1.S1_at--691--331Chr03:33566675..33566699 (25 bp)
ATAAGGTTCGTTCAGTACGCCAGCC
LOC_Os03g59070
Os.22413.1.S1_at--1034--3371Chr03:33566655..33566679 (25 bp)
CAGCCTTGCATGGTCAGTGGTCGAC
LOC_Os03g59070
Os.22413.1.S1_at--152--4491Chr03:33566625..33566649 (25 bp)
GCCGGCCATATTCACTCATTTAAGT
LOC_Os03g59070
Os.22413.1.S1_at--6--2991Chr03:33566549..33566573 (25 bp)
AATGGGCTATTCCTACTCATGAGAG
LOC_Os03g59070
Os.22413.1.S1_at--1124--10791Chr03:33566308..33566332 (25 bp)
TTGTATCCATTTCACTTTCATGCCC
NONE
Target Sequence 
TGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGA
AAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACG
ATGTGGACACCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACT
CATTTAAGTTTGTAGTGAACNCTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCAT
GAGAGAGAGATAATCTTATGGGACTGTAAATCCGATGATCTCCACNTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGT
GTTTTGTCCATAGTAGCAACCAGGAAGTATTAACNATNGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCNCCNCG
AACTNTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCATTGTATTGATGCAGGTTCTTTGTATCCATTTCACT
TTCATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis