Browse Element(s) Details


Os.22583.1.A1_at

Description gb:AK103703.1
DB_XREF= gi:32988912
TID=Os.22583.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136N08, full insert sequence.
FL= gb:AK103703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1271011/11Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g251103/11Clathrin adaptor complex small chain family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22583.1.A1_at--425--7351Chr03:6764040..6764064 (25 bp)
GTGAGCTTGACATCGTATTTAACTT
LOC_Os03g12710
Os.22583.1.A1_at--306--2652Chr03:6764682..6764706 (25 bp)
AACCAGCCTCATACCGAAGTCGATT
LOC_Os03g12710
Os.22583.1.A1_at--928--4631Chr03:6764712..6764736 (25 bp)
GCGTTTCAGCCGTTGAGCCGTGAGA
LOC_Os03g12710
Os.22583.1.A1_at--921--1671Chr03:6764727..6764751 (25 bp)
AGCCGTGAGAGCTTCACTCATGTTA
LOC_Os03g12710
Os.22583.1.A1_at--573--9652Chr03:6764786..6764810 (25 bp)
TCAGATTGCATTTTTCTCCAGTCGC
LOC_Os03g12710
Os.22583.1.A1_at--477--1151Chr03:6764805..6764829 (25 bp)
AGTCGCGTTGCGATTCTCTCAAGTC
LOC_Os03g12710
Os.22583.1.A1_at--23--2852Chr03:6764825..6764849 (25 bp)
AAGTCGCGAGCATCTACCATTTGAC
LOC_Os03g12710
Os.22583.1.A1_at--629--3451Chr03:6764934..6764958 (25 bp)
CAGTACTATCTGGTTTGCTTGCCGA
LOC_Os03g12710
Os.22583.1.A1_at--965--10271Chr03:6764947..6764971 (25 bp)
TTTGCTTGCCGATTGCCAGTTGAGG
LOC_Os03g12710
Os.22583.1.A1_at--753--3071Chr03:6764995..6765019 (25 bp)
AATCATACTAGCCTGTTTCTCCTTC
LOC_Os03g12710
Os.22583.1.A1_at--864--10591Chr03:6765011..6765035 (25 bp)
TTCTCCTTCGGCTGATGATATCTGT
LOC_Os03g12710
Target Sequence 
GTGAGCTTGACATCGTATTTAACTTCAACAAGCTGCATACAATTTTAGATGAAATGATACTTGGGGGACAAGTGATTGAA
ACAAGTTCAGAGCAAATAATGAGATCTGTCGAAGAGATTGCAAGGCTGGAGAAACAGTCAAACACAACCAGCCTCATACC
GAAGTCGATTTCAGAGCGTTTCAGCCGTTGAGCCGTGAGAGCTTCACTCATGTTATGGACAGAAACTTTGAATGCGTGAG
CAGAAGAAATCAGATTGCATTTTTCTCCAGTCGCGTTGCGATTCTCTCAAGTCGCGAGCATCTACCATTTGACATGAANA
TGAGAGCNTGTAGCCATCGTGAATATCTNTGNGTATCCCGCATGAAATTGAATATGTGACCTGAAACGTGAATTCTTCAG
TACTATCTGGTTTGCTTGCCGATTGCCAGTTGAGGCATCGTGTNTCCTAGACAAGNAAAATCATACTAGCCTGTTTCTCC
TTCGGCTGATGATATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22583.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis