Browse Element(s) Details


Os.22695.1.S1_s_at

Description gb:AK106516.1
DB_XREF= gi:32991725
TID=Os.22695.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A11, full insert sequence.
FL= gb:AK103519.1 gb:AK106516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2372011/11expressed protein
LOC_Os04g3079011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22695.1.S1_s_at--783--3252Chr09:14098263..14098287 (25 bp)
CAACTATAGCATACCCTTTTACCCT
LOC_Os09g23720
Os.22695.1.S1_s_at--4--9972Chr09:14098282..14098306 (25 bp)
TACCCTCATCAAACCATCCTGGGAG
LOC_Os09g23720
Os.22695.1.S1_s_at--106--352Chr09:14098334..14098358 (25 bp)
ATAAATCAGCGAATCCGTGCTCCTC
LOC_Os09g23720
Os.22695.1.S1_s_at--309--7312Chr09:14098350..14098374 (25 bp)
GTGCTCCTCCGAAGAAGGCTCCAGA
LOC_Os09g23720
Os.22695.1.S1_s_at--1086--5292Chr09:14098363..14098387 (25 bp)
GAAGGCTCCAGAAACCCTAGGGACT
LOC_Os09g23720
Os.22695.1.S1_s_at--713--1072Chr09:14098381..14098405 (25 bp)
AGGGACTTCAGCCTTCTCTGGCAAG
LOC_Os09g23720
Os.22695.1.S1_s_at--994--6192Chr09:14098446..14098470 (25 bp)
GAGGCAGCATCACGATACTAAGAAC
LOC_Os09g23720
Os.22695.1.S1_s_at--1019--6832Chr09:14098496..14098520 (25 bp)
GTTTCTCAGCCATTACCTGGATTGC
LOC_Os09g23720
Os.22695.1.S1_s_at--1108--7972Chr09:14098597..14098621 (25 bp)
GGATGACTATCAATGGCTAACTCTT
LOC_Os09g23720
Os.22695.1.S1_s_at--856--6532Chr09:14098626..14098650 (25 bp)
GATTTACCATTCATCCTGTGTACAT
LOC_Os09g23720
Os.22695.1.S1_s_at--355--10552Chr09:14098745..14098769 (25 bp)
TTCTCCCATTTTTCTGAATAGTTGT
LOC_Os09g23720
Target Sequence 
CAACTATAGCATACCCTTTTACCCTCATCAAACCATCCTGGGAGGAAGGAGACGTCATCACTCTGAAGGATATAAATCAG
CGAATCCGTGCTCCTCCGAAGAAGGCTCCAGAAACCCTAGGGACTTCAGCCTTCTCTGGCAAGCCAGTCGTTGGCAAAAC
AAGGATCAGAACTGACGGGGGCAGAGGCAGCATCACGATACTAAGAACAAAAGGTTGAGAGTCCAAACAACTTGTTTCTC
AGCCATTACCTGGATTGCTTTCAGCAATTTGATCTCCGTAGCTCTCCAGTTTTTCGTTNTGATTTTTTTTTTTTTNNNGG
CCATGGATTTGGTATTTAGGATGACTATCAATGGCTAACTCTTCAAAGATTTACCATTCATCCTGTGTACATTAGCGACA
TGCGGCTAATGTTATATATGAGAGTTTTGTGTTCAGAAACCATGCCCCTCTACTCATCCAACTTATGTCGGATGTTGTTC
AGGGTTTTCTCCCATTTTTCTGAATAGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22695.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis