Browse Element(s) Details


Os.22807.1.S1_s_at

Description gb:CA759675
DB_XREF= gi:25803714
DB_XREF=BR060010B20F07.ab1
CLONE=BR060010B20F07.ab1
TID=Os.22807.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22807 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5297011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22807.1.S1_s_at--1111--611Chr04:31334033..31334057 (25 bp)
ATGCTGCGATAGGATGCCTGGTGCA
LOC_Os04g52970
Os.22807.1.S1_s_at--304--9191Chr04:31334047..31334071 (25 bp)
TGCCTGGTGCAAAGCATCCTTGGGA
LOC_Os04g52970
Os.22807.1.S1_s_at--760--8611Chr04:31334051..31334075 (25 bp)
TGGTGCAAAGCATCCTTGGGAGCTT
LOC_Os04g52970
Os.22807.1.S1_s_at--641--6231Chr04:31334088..31334112 (25 bp)
GATGGAAGCCTGGACTCATGAAATT
LOC_Os04g52970
Os.22807.1.S1_s_at--153--31Chr04:31334110..31334134 (25 bp)
ATTGGGCTTGCTGAAGATATCGAGA
LOC_Os04g52970
Os.22807.1.S1_s_at--769--6871Chr04:31334192..31334216 (25 bp)
GTATTGACAACAAGCTACTAGCCCA
LOC_Os04g52970
Os.22807.1.S1_s_at--16--2471Chr04:31334200..31334224 (25 bp)
AACAAGCTACTAGCCCAATCACTGG
LOC_Os04g52970
Os.22807.1.S1_s_at--140--1571Chr04:31334204..31334228 (25 bp)
AGCTACTAGCCCAATCACTGGGAAG
LOC_Os04g52970
Os.22807.1.S1_s_at--304--2791Chr04:31334232..31334256 (25 bp)
AAGAGATCTGCTTTATGATGCGGAA
LOC_Os04g52970
Os.22807.1.S1_s_at--743--1991Chr04:31334276..31334300 (25 bp)
ACTACCACCGGCTCAAACATTGGAT
LOC_Os04g52970
Os.22807.1.S1_s_at--737--9971Chr04:31334278..31334302 (25 bp)
TACCACCGGCTCAAACATTGGATCG
LOC_Os04g52970
Target Sequence 
ATGCTGCGATAGGATGCCTGGTGCAAAGCATCCTTGGGAGCTTNTTCACTGAACAGATGGAAGCCTGGACTCATGAAATT
GGGCTTGCTGAAGATATCGAGANGCTTGAGTTTGAGATGAAGGCTGTGGAGAGGGTGCTTGCTGCTGCCNAAGGAANAAG
TATTGACAACAAGCTACTAGCCCAATCACTGGGAAGNCTAAGAGATCTGCTTTATGATGCGGAANACGNTATGGACNAGC
TCNACTACCACCGGCTCAAACATTGGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22807.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis