Browse Element(s) Details


Os.22918.1.S1_a_at

Description gb:AK103536.1
DB_XREF= gi:32988745
TID=Os.22918.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132B05, full insert sequence.
FL= gb:AK119233.1 gb:AK103536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4238011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22918.1.S1_a_at--981--5531Chr07:25360411..25360435 (25 bp)
GAAACGGTCGCATTCTAGGTGGTAA
LOC_Os07g42380
Os.22918.1.S1_a_at--699--5071Chr07:25360659..25360683 (25 bp)
GCAGCCTCGCCTTGAGCAAGATGGT
LOC_Os07g42380
Os.22918.1.S1_a_at--774--2791Chr07:25360676..25360700 (25 bp)
AAGATGGTGTCAAGCCAGGCGCTGA
LOC_Os07g42380
Os.22918.1.S1_a_at--927--891Chr07:25360692..25360716 (25 bp)
AGGCGCTGATGCAGGCTCAGGCACA
LOC_Os07g42380
Os.22918.1.S1_a_at--66--8251Chr07:25360711..25360735 (25 bp)
GGCACAGCAGCATCTGAAGCAGGCA
LOC_Os07g42380
Os.22918.1.S1_a_at--207--911Chr07:25360750..25360774 (25 bp)
AGGCGTGAGCCAGGCCATGTATGAT
LOC_Os07g42380
Os.22918.1.S1_a_at--501--731Chr07:25360766..25360790 (25 bp)
ATGTATGATGCCAGCTTCCCCAACG
LOC_Os07g42380
Os.22918.1.S1_a_at--541--5231Chr07:25360824..25360848 (25 bp)
GAATAAAATTCCTGCGAGCTCGTCG
LOC_Os07g42380
Os.22918.1.S1_a_at--1097--5891Chr07:25360839..25360863 (25 bp)
GAGCTCGTCGCTGTAATTTGTGACT
LOC_Os07g42380
Os.22918.1.S1_a_at--850--211Chr07:25360854..25360878 (25 bp)
ATTTGTGACTCGATCAGTCTGATCT
LOC_Os07g42380
Os.22918.1.S1_a_at--599--4871Chr07:25360947..25360971 (25 bp)
GCTATTTTCGATGTTGTTTCGTACA
LOC_Os07g42380
Target Sequence 
GAAACGGTCGCATTCTAGGTGGTAAACCAATCAAGTGTTCCTGGGGCAACAAGCCGACGCCACCCGGCACCACGTCGGCG
CCTCTGCCCCCTCCCGCCGCTCCNAGCGTGACGGCGGCCGATCTCCTCGAGTACCAGCGCAGCCTCGCCTTGAGCAAGAT
GGTGTCAAGCCAGGCGCTGATGCAGGCTCAGGCACAGCAGCATCTGAAGCAGGCAATGGGGATGGGTGCAGGCGTGAGCC
AGGCCATGTATGATGCCAGCTTCCCCAACGTTGGCCCCTCGCAGCAGCAGCTCATGTACTACTGAATAAAATTCCTGCGA
GCTCGTCGCTGTAATTTGTGACTCGATCAGTCTGATCTCTTTTTTTTTNNNCTGGTTTTGTTTTAGCTAATGTTACTTTT
TTTNACGTCTATATTTAGAGTGTTTCTGGAGCTATTTTCGATGTTGTTTCGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22918.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis