Browse Element(s) Details


Os.22987.1.S1_at

Description gb:AK103624.1
DB_XREF= gi:32988833
TID=Os.22987.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0075H14.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133N14, full insert sequence.
FL= gb:AK103624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28680Os.8260.1.S1_at11/1110+14631191..14633483expressed protein
LOC_Os10g28690Os.56239.1.S1_at11/1110+14645242..14646975expressed protein
LOC_Os10g28700Os.53394.1.S1_at11/1110+14650476..14651268expressed protein
LOC_Os10g28710Os.22987.1.S1_at11/1110+14654071..14656835expressed protein
LOC_Os10g28724OsAffx.22848.4.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28724OsAffx.22848.3.S1_x_at1/1110+14663569..14667090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28740NANA10+14667436..14669515retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g28750NANA10+14672567..14673019transposon protein, putative, unclassified
LOC_Os10g28760OsAffx.30578.2.S1_x_at11/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30578.1.S1_x_at4/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_x_at2/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28760OsAffx.30579.1.S1_at1/1110+14674030..14675178BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.2.S1_x_at11/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28770OsAffx.30578.1.S1_x_at4/1110+14676765..14677883BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.1.S1_x_at11/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30578.2.S1_x_at10/1110+14681269..14682927BTB/POZ domain containing protein
LOC_Os10g28780OsAffx.30579.1.S1_x_at1/1110+14681269..14682927BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22987.1.S1_at--157--9111Chr10:14654705..14654729 (25 bp)
TGCTCCCTTCTATGTCAATACTAAC
LOC_Os10g28710
Os.22987.1.S1_at--816--9811Chr10:14654684..14654708 (25 bp)
TAACTTTTTCCCAGTTTGCTGCATA
LOC_Os10g28710
Os.22987.1.S1_at--440--10171Chr10:14654657..14654681 (25 bp)
TATCATGACATGTTCTCTCCACCTT
LOC_Os10g28710
Os.22987.1.S1_at--525--10051Chr10:14654623..14654647 (25 bp)
TAGATTCATCTCATGTCTCTTCACA
LOC_Os10g28710
Os.22987.1.S1_at--139--10291Chr10:14654545..14654569 (25 bp)
TTTCCGCTTTCATGAGCTCTAGTTT
LOC_Os10g28710
Os.22987.1.S1_at--416--10051Chr10:14654526..14654550 (25 bp)
TAGTTTTCTACTTCTCTTCAAGCCT
LOC_Os10g28710
Os.22987.1.S1_at--589--7171Chr10:14654468..14654492 (25 bp)
GTCTGCGGAACATGCAAGTCCCAAT
LOC_Os10g28710
Os.22987.1.S1_at--46--8311Chr10:14654345..14654369 (25 bp)
GGCTTTGCTGTTCATATTTACCCTA
LOC_Os10g28710
Os.22987.1.S1_at--388--2831Chr10:14654307..14654331 (25 bp)
AAGTTACCTGTCTTAGTTCCTGCTA
LOC_Os10g28710
Os.22987.1.S1_at--792--2031Chr10:14654278..14654302 (25 bp)
ACTATGTTTGCCACCTAGCAGTCAA
LOC_Os10g28710
Os.22987.1.S1_at--491--6231Chr10:14654204..14654228 (25 bp)
GATGGCTGTCCATGTTGATGTTCTG
LOC_Os10g28710
Target Sequence 
TGCTCCCTTCTATGTCAATACTAACTTTTTCCCAGTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCAT
TCTAGATTCATCTCATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCGAATCCC
TTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTTGAGGAACAAAGTTAGACAATGATGTC
TGCGGAACATGCAAGTCCCAATATGGTTGGCTTTGCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTT
AGTTCCTGCTACATTACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATTGTAATT
CCNATCTTAGATGGCTGTCCATGTTGATGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis