Browse Element(s) Details


Os.23033.1.S1_s_at

Description gb:AK112064.1
DB_XREF= gi:37988727
TID=Os.23033.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E01, full insert sequence.
FL= gb:AK112064.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0902011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08990OsAffx.9704.1.S1_at11/111+4506027..4509900hypothetical protein
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23033.1.S1_s_at--759--7231Chr01:4536479..4536503 (25 bp)
GTCCCCTTTATTTATGCGTTCAACT
LOC_Os01g09020
Os.23033.1.S1_s_at--515--10351Chr01:4536485..4536509 (25 bp)
TTTATTTATGCGTTCAACTCCTATT
LOC_Os01g09020
Os.23033.1.S1_s_at--755--9051Chr01:4536515..4536539 (25 bp)
TGCTTCGATATGTTAACAGCCAAGG
LOC_Os01g09020
Os.23033.1.S1_s_at--1137--711Chr01:4536524..4536548 (25 bp)
ATGTTAACAGCCAAGGTGCCCACAG
LOC_Os01g09020
Os.23033.1.S1_s_at--308--4391Chr01:4536533..4536557 (25 bp)
GCCAAGGTGCCCACAGATTCGAAAT
LOC_Os01g09020
Os.23033.1.S1_s_at--520--6711Chr01:4536592..4536616 (25 bp)
GTTCTGTTGTTTGACAACTTAGGAT
LOC_Os01g09020
Os.23033.1.S1_s_at--1062--7891Chr01:4536750..4536774 (25 bp)
GGTTGATACCTGTTCAAATACCTTT
LOC_Os01g09020
Os.23033.1.S1_s_at--236--1771Chr01:4536757..4536781 (25 bp)
ACCTGTTCAAATACCTTTGTGTGTG
LOC_Os01g09020
Os.23033.1.S1_s_at--958--2371Chr01:4536766..4536790 (25 bp)
AATACCTTTGTGTGTGGTGAAGTTT
LOC_Os01g09020
Os.23033.1.S1_s_at--684--7351Chr01:4536782..4536806 (25 bp)
GTGAAGTTTGTCAGCATCGTGGATG
LOC_Os01g09020
Os.23033.1.S1_s_at--1063--4971Chr01:4536795..4536819 (25 bp)
GCATCGTGGATGCATTTGTATGCTT
LOC_Os01g09020
Target Sequence 
GTCCCCTTTATTTATGCGTTCAACTCCTATTTGATCTGCTTCGATATGTTAACAGCCAAGGTGCCCACAGATTCGAAATG
TTGTGAGTTGTAGTTAAGGATGTCTGGCTTGTGGTTCTGTTGTTTGACAACTTAGGATTGATCAACTTAGATAAGTGTTT
TTGTTTGTCGGGTTGCCGATGATCCTATCAGCAACGCTAGCTTAGGGTGGGTGTCACTAATTTATTTGGTGATGCCAGCT
TATAAGATTTGTGAAAAGGAGCGAAGATTATGGTTGATACCTGTTCAAATACCTTTGTGTGTGGTGAAGTTTGTCAGCAT
CGTGGATGCATTTGTATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23033.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis