Browse Element(s) Details


Os.23126.1.S1_at

Description gb:AK108053.1
DB_XREF= gi:32993262
TID=Os.23126.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H05, full insert sequence.
FL= gb:AK108053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4338011/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43380Os.23126.1.S1_at11/115+25141682..25144197Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23126.1.S1_at--840--3412Chr10:5199824..5199843 (20 bp)
CAGAGATACACACATGTTCCCGCAG
NONE
Os.23126.1.S1_at--599--2591Chr05:25142140..25142164 (25 bp)
AACGACCGGGTGATCGACGACTCAG
LOC_Os05g43380
Os.23126.1.S1_at--831--251Chr05:25142056..25142080 (25 bp)
ATATCGAGATGCGTCCAGATCCTCA
LOC_Os05g43380
Os.23126.1.S1_at--276--5011Chr05:25142028..25142052 (25 bp)
GCATGGCCGAGCTATCTCAGGTGGA
LOC_Os05g43380
Os.23126.1.S1_at--623--8151Chr05:25141961..25141985 (25 bp)
GGAAATATTCATCTCGCTTAACGGT
LOC_Os05g43380
Os.23126.1.S1_at--207--7571Chr05:25141929..25141953 (25 bp)
GGGCCCTGTGGCTGAAACGCAAGAT
LOC_Os05g43380
Os.23126.1.S1_at--272--10451Chr05:25141892..25141916 (25 bp)
TTAGGGCATGCCATTTGTCACCTTA
LOC_Os05g43380
Os.23126.1.S1_at--1116--4991Chr05:25141808..25141832 (25 bp)
GCATGTCCTGCTGGTCGGTTGAAAA
LOC_Os05g43380
Os.23126.1.S1_at--5--3491Chr05:25141779..25141803 (25 bp)
CAGGATCTTAGGCTCTTCTTGTATA
LOC_Os05g43380
Os.23126.1.S1_at--73--10811Chr05:25141749..25141773 (25 bp)
TTGTATCCCAAATTTCCGTCATCTT
LOC_Os05g43380
Os.23126.1.S1_at--489--5051Chr05:25141707..25141731 (25 bp)
GCAGCAGATGCGAACTTTGGTAACC
LOC_Os05g43380
Target Sequence 
CAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACG
ACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGC
ATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCT
CCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACC
TGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATT
TAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAAT
TTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis