Browse Element(s) Details


Os.23157.1.S1_at

Description gb:AK063533.1
DB_XREF= gi:32973551
TID=Os.23157.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B08, full insert sequence.
FL= gb:AK063533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08120OsAffx.25936.1.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.7.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.2.S1_x_at8/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.5.S1_x_at2/114+4317877..4319054hypothetical protein
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.10827.1.S1_x_at8/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.46055.2.S1_x_at6/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150OsAffx.18122.1.S1_x_at1/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08160OsAffx.25922.2.S1_at11/114+4330906..4332201hypothetical protein
LOC_Os04g08170OsAffx.30829.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.30829.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08180OsAffx.3745.1.S1_at10/114+4336278..4339342expressed protein
LOC_Os04g08190Os.23157.1.S1_at11/114+4340284..4342757expressed protein
LOC_Os04g08200OsAffx.25921.2.S1_at11/114+4345963..4348188hypothetical protein
LOC_Os04g08210Os.27639.1.S1_x_at8/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210OsAffx.8980.1.S1_at6/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210Os.53731.1.S1_at2/114+4350096..4355546transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23157.1.S1_at--532--9171Chr04:4342206..4342230 (25 bp)
TGCCCTTAACAAATATCTCTCTCGT
LOC_Os04g08190
Os.23157.1.S1_at--469--7531Chr04:4342229..4342253 (25 bp)
GTGGAATCGATGTCGCCCAGAAACT
LOC_Os04g08190
Os.23157.1.S1_at--469--2551Chr04:4342250..4342274 (25 bp)
AACTGCTCGACCTAGTAGACTTGCG
LOC_Os04g08190
Os.23157.1.S1_at--106--3031Chr04:4342320..4342344 (25 bp)
AATGCTGTTCTATGCGAGCTACCAG
LOC_Os04g08190
Os.23157.1.S1_at--861--1111Chr04:4342343..4342367 (25 bp)
AGTGCAGCAAGGAGTCCCATGCCAA
LOC_Os04g08190
Os.23157.1.S1_at--228--6231Chr04:4342504..4342528 (25 bp)
GAGGCCGGAACGTCTGATGCTACAG
LOC_Os04g08190
Os.23157.1.S1_at--819--9771Chr04:4342538..4342562 (25 bp)
TAAGTTAACCTCCTCCGTCATTAAT
LOC_Os04g08190
Os.23157.1.S1_at--681--133Chr04:4342561..4342585 (25 bp)
ATTAATTGCATGTCCTCCTGTTTGA
LOC_Os04g08190
Os.23157.1.S1_at--986--6731Chr04:4342595..4342619 (25 bp)
GTTCTTGTTATCATTCTCCTATTTG
LOC_Os04g08190
Os.23157.1.S1_at--406--2391Chr04:4342689..4342713 (25 bp)
AAACTCTTGCTCATACCCTAAGGTA
LOC_Os04g08190
Os.23157.1.S1_at--278--3171Chr04:4342718..4342742 (25 bp)
AATTGCTCACTACTGTCTGCTAATA
LOC_Os04g08190
Target Sequence 
TGCCCTTAACAAATATCTCTCTCGTGGAATCGATGTCGCCCAGAAACTGCTCGACCTAGTAGACTTGCGCAAGGAGATTG
ACATGGTGCAGGTGATCCTGGCGGTGTGGGTGGAAATGCTGTTCTATGCGAGCTACCAGTGCAGCAAGGAGTCCCATGCC
AAGCAGCTGAGCCAGGGGGGCGAGTTGACGACCATCGTGTGGCTCATGGCAGAACACGCCGGCCTGTTCCTTGTCAACAA
AACCAGAAAGGGAGCTGAAGAGGCTAACTGGAGGAAAAGGAAAGCTAATAAGAAAAAAGAGGCCGGAACGTCTGATGCTA
CAGTTAACAAGCTAAGTTAACCTCCTCCGTCATTAATTAATTGCATGTCCTCCTGTTTGATTGCATAGAGTTCTTGTTAT
CATTCTCCTATTTGATTGCATAGAGTGGCAAGTTATAACTTTGTACGTGCCAAAATAGTTTCCATGGATTGCAATTTGTA
AACAAACTCTTGCTCATACCCTAAGGTAATATAATTGCTCACTACTGTCTGCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis