Browse Element(s) Details


OsAffx.25921.2.S1_at

Description tigr:9632.m00733
TID=OsAffx.25921.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0820011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.10827.1.S1_x_at8/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.46055.2.S1_x_at6/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150OsAffx.18122.1.S1_x_at1/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08160OsAffx.25922.2.S1_at11/114+4330906..4332201hypothetical protein
LOC_Os04g08170OsAffx.30829.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.30829.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08180OsAffx.3745.1.S1_at10/114+4336278..4339342expressed protein
LOC_Os04g08190Os.23157.1.S1_at11/114+4340284..4342757expressed protein
LOC_Os04g08200OsAffx.25921.2.S1_at11/114+4345963..4348188hypothetical protein
LOC_Os04g08210Os.27639.1.S1_x_at8/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210OsAffx.8980.1.S1_at6/114+4350096..4355546transposon protein, putative, unclassified
LOC_Os04g08210Os.53731.1.S1_at2/114+4350096..4355546transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25921.2.S1_at--338--6731Chr04:4346445..4346469 (25 bp)
GTTTGGTCCAAACACCAGGCCGCCG
LOC_Os04g08200
OsAffx.25921.2.S1_at--594--951Chr04:4346394..4346418 (25 bp)
AGGAAATTCTTCTTCCGGCGGCACA
LOC_Os04g08200
OsAffx.25921.2.S1_at--627--9551Chr04:4346384..4346408 (25 bp)
TCTTCCGGCGGCACAACCGGTGGCG
LOC_Os04g08200
OsAffx.25921.2.S1_at--94--4391Chr04:4346352..4346376 (25 bp)
CCAAGAATCAGCGACATGAGGAGCT
LOC_Os04g08200
OsAffx.25921.2.S1_at--814--4791Chr04:4346314..4346338 (25 bp)
GCTCGCCAAGATGCTGATCGATCAA
LOC_Os04g08200
OsAffx.25921.2.S1_at--12--8351Chr04:4346247..4346271 (25 bp)
GGCGGAGTTGCGCTAAACAAGTACC
LOC_Os04g08200
OsAffx.25921.2.S1_at--738--9771Chr04:4346234..4346258 (25 bp)
TAAACAAGTACCTGTCTCGCGGCGT
LOC_Os04g08200
OsAffx.25921.2.S1_at--711--3211Chr04:4346230..4346254 (25 bp)
CAAGTACCTGTCTCGCGGCGTGGAG
LOC_Os04g08200
OsAffx.25921.2.S1_at--905--7511Chr04:4346211..4346235 (25 bp)
GTGGAGCTCGCCATGAAACTGCTGG
LOC_Os04g08200
OsAffx.25921.2.S1_at--303--4431Chr04:4346202..4346226 (25 bp)
GCCATGAAACTGCTGGACCTGGAGA
LOC_Os04g08200
OsAffx.25921.2.S1_at--126--3511Chr04:4346128..4346152 (25 bp)
CATGGTGTTCTACGCGAGCTACCGG
LOC_Os04g08200
Target Sequence 
GTTTGGTCCAAACACCAGGCCGCCGCCGCCGCCGCCGCCGCCGCCGTGCCGAGGAAATTCTTCTTCCGGCGGCACAACCG
GTGGCGAGTTTCTCCAAGAATCAGCGACATGAGGAGCTGGGAGGAGGAGGAGCTCGCCAAGATGCTGATCGATCAATGGC
GGCGCGGACGGGACGACGACACCGGCGGCGGCGGCGGCGGCGGAGTTGCGCTAAACAAGTACCTGTCTCGCGGCGTGGAG
CTCGCCATGAAACTGCTGGACCTGGAGAGGGAGGGGAAGGCGGACATGGTGCAGGTGATCCTGGAGGTGTGGGTGGACAT
GGTGTTCTACGCGAGCTACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25921.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis