Browse Element(s) Details


Os.23161.2.S1_x_at

Description gb:AK068922.1
DB_XREF= gi:32978946
TID=Os.23161.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170B19, full insert sequence.
FL= gb:AK068922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33330Os.16162.1.S1_at10/118+20657585..20661844myosin-like protein, putative, expressed
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23161.2.S1_x_at--920--5951Chr08:20685581..20685605 (25 bp)
GAGCAATCATCGCTGTCTGGCTATC
LOC_Os08g33380
Os.23161.2.S1_x_at--946--3911Chr08:20685565..20685589 (25 bp)
CTGGCTATCCTCGATTGTTGTCAAA
LOC_Os08g33380
Os.23161.2.S1_x_at--598--2351Chr08:20685544..20685567 (24 bp)
AAAGCTGTCGATTCAGTTCCAGTGC
LOC_Os08g33380
Os.23161.2.S1_x_at--646--1951Chr08:20684878..20684902 (25 bp)
ACTGGCCAATGGCTTTGATGCTCTA
LOC_Os08g33380
Os.23161.2.S1_x_at--55--3111Chr08:20684828..20684852 (25 bp)
AATAGCTGTGTATCCTGTTTCTCTG
LOC_Os08g33380
Os.23161.2.S1_x_at--975--6831Chr08:20684812..20684836 (25 bp)
GTTTCTCTGCTTGAACGTTGTCATT
LOC_Os08g33380
Os.23161.2.S1_x_at--855--6851Chr08:20684696..20684720 (25 bp)
GTTTGCAGTATCATCTGACTTCTGA
LOC_Os08g33380
Os.23161.2.S1_x_at--731--6411Chr08:20684668..20684692 (25 bp)
GATCTCCACATTTATGGCTGCGCTA
LOC_Os08g33380
Os.23161.2.S1_x_at--450--8331Chr08:20684653..20684677 (25 bp)
GGCTGCGCTAAAATGCTTGTGATTC
LOC_Os08g33380
Os.23161.2.S1_x_at--619--271Chr08:20684623..20684647 (25 bp)
ATATGGAGGTCAGCTGGTCCTGTTT
LOC_Os08g33380
Os.23161.2.S1_x_at--411--5351Chr08:20684478..20684502 (25 bp)
GAAGATTTCTGTTCTTGTGCCAACA
LOC_Os08g33380
Target Sequence 
GAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAG
CTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGG
CTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTA
GAGCCTTTTGTTTTTTCTCATGNAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCA
GCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTT
CTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAG
TTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCTGT
TCTTGTGCCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23161.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis