Browse Element(s) Details


Os.23231.1.A1_at

Description gb:CB621776
DB_XREF= gi:29616764
DB_XREF=OSIIEa07O07.r
CLONE=OSIIEa07O07
TID=Os.23231.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0909010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09060Os.35677.1.S1_at11/113+4676357..46792501,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein
LOC_Os03g09100Os.13903.1.S1_at10/113+4705256..4713120anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os03g09110Os.7871.1.S1_at10/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09110Os.50644.2.S1_x_at1/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09120Os.52977.1.S1_at11/113+4727821..4729370expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23231.1.A1_at--678--4591Chr03:4700317..4700341 (25 bp)
GCGAATCGAGATAGCCCTGTACTGC
LOC_Os03g09090
Os.23231.1.A1_at--225--7011Chr03:4700299..4700323 (25 bp)
GTACTGCTTCGCGAGAGCTATTGAG
LOC_Os03g09090
Os.23231.1.A1_at--280--4991Chr03:4700261..4700285 (25 bp)
GCATGACCGATGCAGGACTTTGCCC
LOC_Os03g09090
Os.23231.1.A1_at--283--10291Chr03:4700243..4700267 (25 bp)
TTTGCCCTCCAATTCTGCAGATAAA
LOC_Os03g09090
Os.23231.1.A1_at--741--5871Chr03:4700216..4700240 (25 bp)
GAGCCGACGTGGTGGTATTCAGTAT
LOC_Os03g09090
Os.23231.1.A1_at--963--6911Chr03:4700195..4700219 (25 bp)
GTATGGCTACGTCGATCATCATGCA
LOC_Os03g09090
Os.23231.1.A1_at--803--6391Chr03:4700182..4700206 (25 bp)
GATCATCATGCACTGCTATGCTCAA
LOC_Os03g09090
Os.23231.1.A1_at--136--6991Chr03:4700134..4700158 (25 bp)
GTACCTGAATGTCCTTGACTGGGTA
LOC_Os03g09090
Os.23231.1.A1_at--891--8931Chr03:4700119..4700143 (25 bp)
TGACTGGGTATTTGGTGTGCCACCT
LOC_Os03g09090
Os.23231.1.A1_at--221--7471Chr03:4700105..4700129 (25 bp)
GTGTGCCACCTCCATCTGATGAAGA
LOC_Os03g09090
Os.23231.1.A1_at--1056--1811NONE
ACAGTAGGTTTATCCCAACAAGCGG
NONE
Target Sequence 
GCGAATCGAGATAGCCCTGTACTGCTTCGCGAGAGCTATTGAGAGTTTTTTCACATGCATGACCGATGCAGGACTTTGCC
CTCCAATTCTGCAGATAAAACGAGCCGACGTGGTGGTATTCAGTATGGCTACGTCGATCATCATGCACTGCTATGCTCAA
GAAAGAGAAGTTTTTCGGTCCAAGTACCTGAATGTCCTTGACTGGGTATTTGGTGTGCCACCTCCATCTGATGAAGAAAG
CAATAAAGATTTTCCATCCGATGATGGAACCAAGAAAATTTGTTGAGTAGCATGGTGGCCTGTAGAGAGTTATGTAGATG
TTCCAGTGTTAAAGTGAAATTGTGATCTTAGTCAANGATAGATAGGCACATTAGAAGGATGAGCATTGAACAGTAGGTTT
ATCCCAACAAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23231.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis