Browse Element(s) Details


Os.23236.1.S1_at

Description gb:AK063421.1
DB_XREF= gi:32973439
TID=Os.23236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putativeelongation factor 2 (P0439E07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C05, full insert sequence.
FL= gb:AK063421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5390011/11Elongation factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23236.1.S1_at--1101--7811Chr01:31323453..31323477 (25 bp)
GGTCATTTATGCTGCTCAGCTCACT
LOC_Os01g53900
Os.23236.1.S1_at--644--3231Chr01:31323485..31323509 (25 bp)
CAAGACTGCTTGAGCCTGTTTACTT
LOC_Os01g53900
Os.23236.1.S1_at--250--5271Chr01:31323531..31323555 (25 bp)
GAATGCTCTTGGTGGAATTTACAGT
LOC_Os01g53900
Os.23236.1.S1_at--398--4271Chr01:31323637..31323661 (25 bp)
CCTGTTATCGAGTCATTTGGGTTCA
LOC_Os01g53900
Os.23236.1.S1_at--872--8591Chr01:31323654..31323678 (25 bp)
TGGGTTCACAAGCACCCTTAGGGCA
LOC_Os01g53900
Os.23236.1.S1_at--421--3011Chr01:31323726..31323750 (25 bp)
AATGCTGTCAGTTGATCCTTTGGAG
LOC_Os01g53900
Os.23236.1.S1_at--203--10871Chr01:31323745..31323769 (25 bp)
TTGGAGCCTGGCACCAGACAGCTAA
LOC_Os01g53900
Os.23236.1.S1_at--582--9791Chr01:31323767..31323791 (25 bp)
TAACCTTGTCCTGGATATCCGCAAG
LOC_Os01g53900
Os.23236.1.S1_at--1068--2251Chr01:31323811..31323835 (25 bp)
AAATCACCCCTCTGTCTGAATACGA
LOC_Os01g53900
Os.23236.1.S1_at--853--8451Chr01:31323902..31323926 (25 bp)
TGGCCATCTATGTGAGCAGTGAGCT
LOC_Os01g53900
Os.23236.1.S1_at--385--451Chr01:31323947..31323971 (25 bp)
ATGTCGAACGGTTGTACGGTAGCAT
LOC_Os01g53900
Target Sequence 
GGTCATTTATGCTGCTCAGCTCACTGCCAAGCCAAGACTGCTTGAGCCTGTTTACTTGGTGGAGATTCAGGCCCCTGAGA
ATGCTCTTGGTGGAATTTACAGTGTTCTGAACCAGAAGAGAGGACATGTGTTCGAGGAGATGCAGAGGCCTGGTACCCCA
CTCTACAACATCAAAGCTTACCTCCCTGTTATCGAGTCATTTGGGTTCACAAGCACCCTTAGGGCAGCAACCTCTGNTCN
NNNNNNNNCCNNNNNNNNATTTGATCACTGGGAAATGCTGTCAGTTGATCCTTTGGAGCCTGGCACCAGACAGCTAACCT
TGTCCTGGATATCCGCAAGAGGAAGGGTCTGAAGGAGCAAATCACCCCTCTGTCTGAATACGAGGACAAACTCTAGATAT
TTAATCATGTTATTATGCTTATAGTGTTATATCGCTTTATAATTGGTAGTGGCCATCTATGTGAGCAGTGAGCTGCTATT
TCATGTATAATATTATGTCGAACGGTTGTACGGTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis