Browse Element(s) Details


Os.23237.1.S1_at

Description gb:AK100541.1
DB_XREF= gi:32985750
TID=Os.23237.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative trehalose-6-phosphate synthase (OSJNBa0081P02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102I04, full insert sequence.
FL= gb:AK100541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1236011/11Trehalose-6-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12320Os.38092.1.S1_at11/113+6473023..6478089UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed
LOC_Os03g12330NANA3+6484157..6484597hypothetical protein
LOC_Os03g12340Os.47130.4.A1_x_at5/113+6485933..6486190retrotransposon protein, putative, unclassified
LOC_Os03g12350Os.11949.1.S1_at11/113+6491886..6497626myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23237.1.S1_at--505--8811Chr03:6498701..6498725 (25 bp)
TGTTCCAGATGATCACAAGCTCCAC
LOC_Os03g12360
Os.23237.1.S1_at--840--8091Chr03:6498511..6498535 (25 bp)
GGACGACGACGAATGAGCACCCATA
LOC_Os03g12360
Os.23237.1.S1_at--862--5271Chr03:6498501..6498525 (25 bp)
GAATGAGCACCCATAGGGCGCGCGA
LOC_Os03g12360
Os.23237.1.S1_at--180--5091Chr03:6498444..6498468 (25 bp)
GCACCGGAGAGCCTCGTTTAGTTCC
LOC_Os03g12360
Os.23237.1.S1_at--397--7751Chr03:6498380..6498404 (25 bp)
GGTGTACATGATTTCCTATGATTCT
LOC_Os03g12360
Os.23237.1.S1_at--486--6571Chr03:6498361..6498385 (25 bp)
GATTCTTCAGGGTATTGTACCGTAC
LOC_Os03g12360
Os.23237.1.S1_at--434--10352Chr05:20030079..20030106 (23 bp)
TTTAGTCCTTGGTTAGAGCATCATG
NONE
Os.23237.1.S1_at--279--7031Chr03:6498263..6498287 (25 bp)
GTAAAGCTCGGGTTACCGCAACAAT
LOC_Os03g12360
Os.23237.1.S1_at--565--10311Chr03:6498229..6498253 (25 bp)
TTTCTCCGAGCAACACGTGATCTAG
LOC_Os03g12360
Os.23237.1.S1_at--376--251Chr03:6498195..6498219 (25 bp)
ATATCTCGACAAATCTGCTGCTTAA
LOC_Os03g12360
Os.23237.1.S1_at--256--3091Chr03:6498172..6498196 (25 bp)
AATCAATGCATGGTCCTTCATCTGG
LOC_Os03g12360
Target Sequence 
TGTTCCAGATGATCACAAGCTCCACCTGCGGCGAGTCGCTGGCGGCCACGGCGGAGGTCTTCGCCTGCACCGTCGGCCGC
AAGCCGAGCAAGGCCAAGTACTACCTCGACGACACGGCGGAGGTCGTCAGGCTGATGCAGGGCTTGGCCTCCGTCTCCAA
CGAGCTGGCTCGGGCGGCGAGCCCCCCGGAGGACGACGACGAATGAGCACCCATAGGGCGCGCGAGGCGTGCCATGGAAA
GGATTAGGCAGTGCGGTGCACCGGAGAGCCTCGTTTAGTTCCCCCCGGTTTGAGCGTTTGATGGGTCGTAGTTGCTAGTT
AGGTGTACATGATTTCCTATGATTCTTCAGGGTATTGTACCGTACGGAGTAGTGATTTAGTCCTTGGTTAGAGCATCATG
AATTGGTTTGTCATCAGTAAGAGAGTATTATTGATCTAGTAAAGCTCGGGTTACCGCAACAATTATCATATTTTTCTCCG
AGCAACACGTGATCTAGTGTTGAACTATATCTCGACAAATCTGCTGCTTAATCAATGCATGGTCCTTCATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis