Browse Element(s) Details


Os.23249.1.A1_at

Description gb:CA759051
DB_XREF= gi:25803090
DB_XREF=BR060004B20B11.ab1
CLONE=BR060004B20B11.ab1
TID=Os.23249.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23249 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g255501/11puative protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23249.1.A1_at--943--91NONE
ATTCCCGTATCCCTGTGAACAGCTG
NONE
Os.23249.1.A1_at--1003--8671NONE
TGTGAACAGCTGGTACTGTCCTTCC
NONE
Os.23249.1.A1_at--262--8711NONE
TGTCCTTCCCAATTTCATTCTTTGA
NONE
Os.23249.1.A1_at--508--10691Chr07:4901154..4901264 (24 bp)
TTGGTTTGCTTTGCCAAAAGGTTAT
NONE
Os.23249.1.A1_at--1146--3671Chr09:15329139..15329168 (23 bp)
CTTTGCCAAAAGGTTATTACTCTAG
LOC_Os09g25550
Os.23249.1.A1_at--874--2051Chr04:4490693..4491014 (25 bp)
ACATTTGGACCAGGTGGCCCGGGAT
NONE
Os.23249.1.A1_at--647--1531NONE
AGCATGGGTGGCGATTTAGTTTACG
NONE
Os.23249.1.A1_at--454--10411NONE
TTAGTTTACGGATTGATAGTCCCTA
NONE
Os.23249.1.A1_at--612--6591NONE
GATTGATAGTCCCTAAAATCTATGT
NONE
Os.23249.1.A1_at--442--8791NONE
TGTTCTTTTATTGGTTGTGGGCCTT
NONE
Os.23249.1.A1_at--922--8551NONE
TGGTTGTGGGCCTTTTATCCAGAGG
NONE
Target Sequence 
ATTCCCGTATCCCTGTGAACAGCTGGTACTGTCCTTCCCAATTTCATTCTTTGAAAATGTAAGTTTGTTTGGAGAACGGG
ACATTCCGCGCTGCCTCCTCAATCGATGCTGTGCTGTTCCACTGCCTCAAGCGTTACCGCCCCGGTATGCCCCATCTTGG
TTTGCTTTGCCAAAAGGTTATTACTCTAGTTACCCGGGGGGTGGGTACCTGGGCTATCCTCCCCAAACCGGGATTGCGGG
ATACTATTGCGGTGGTATCTCGACATTTGGACCAGGTGGCCCGGGATGTTTTTACCCAGGAGCATGGGTGGCGATTTAGT
TTACGGATTGATAGTCCCTAAAATCTATGTTTCGTGATGGGGGTTTAGTTTTGTTCTTTTATTGGTTGTGGGCCTTTTAT
CCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23249.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis