Browse Element(s) Details


Os.23268.1.S1_at

Description gb:AK067954.1
DB_XREF= gi:32977972
TID=Os.23268.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-binding protein (OSJNBa0095C07.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128J21, full insert sequence.
FL= gb:AK062550.1 gb:AK067954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4219611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23268.1.S1_at--971--711Chr10:22373255..22373279 (25 bp)
ATGATCCCTTGGCTGGTAGCAATCA
LOC_Os10g42196
Os.23268.1.S1_at--719--4971Chr10:22373224..22373248 (25 bp)
GCATCTTGCGTCATCTGATCTGGAA
LOC_Os10g42196
Os.23268.1.S1_at--737--3611Chr10:22373092..22373116 (25 bp)
CTTGGAAGCACGACAATCCTCTTGT
LOC_Os10g42196
Os.23268.1.S1_at--643--6911Chr10:22373069..22373093 (25 bp)
GTAGGACACCAACGTCTGGAAGCTT
LOC_Os10g42196
Os.23268.1.S1_at--1025--1451Chr10:22372982..22373006 (25 bp)
AGAAGTTGCGAGTTGCCACTGATAT
LOC_Os10g42196
Os.23268.1.S1_at--818--6971Chr10:22372932..22372956 (25 bp)
GTACGGAGTCCACCTAAATCATGCA
LOC_Os10g42196
Os.23268.1.S1_at--1093--8351Chr10:22372861..22372885 (25 bp)
GGCGGACAGCCCTAGGAATCATGAT
LOC_Os10g42196
Os.23268.1.S1_at--665--3071Chr10:22372845..22372869 (25 bp)
AATCATGATGTGTTCTCCAGGGAGA
LOC_Os10g42196
Os.23268.1.S1_at--329--1151Chr10:22372787..22372811 (25 bp)
AGTCGCCTGATAATGCTCCAATGAG
LOC_Os10g42196
Os.23268.1.S1_at--5--11Chr10:22372751..22372775 (25 bp)
TTAATAGTTCCGTGACCTTACCTCG
LOC_Os10g42196
Os.23268.1.S1_at--747--9651Chr10:22372588..22372704 (25 bp)
TCACCACGAGGCCTTTTATCAAAGC
LOC_Os10g42196
Target Sequence 
ATGATCCCTTGGCTGGTAGCAATCAAAAGTTGCATCTTGCGTCATCTGATCTGGAAGCACGGCAAGTGAAGTGTGCCACC
CCAACTGCTGAAAGACTGGATGTGAAGAACAAAAATTCAGGAATTATGGGAAATCGCAAGAAGTTGCAAGTTGTTACATC
TAGCTTGGAAGCACGACAATCCTCTTGTAGGACACCAACGTCTGGAAGCTTGGATAAGAAGAATCAAAGCTTAGACAAGA
GGAGTCAAAGTTCAGAAGTGTTGTTAAAACGTAAGAAGTTGCGAGTTGCCACTGATATGGAATCACCTCTATCAAATGAT
GGTGTACGGAGTCCACCTAAATCATGCAAGAGATATGCAGAAAATACTTTATCCTCTACTCCCAGGCTCCTGAAGGCGGA
CAGCCCTAGGAATCATGATGTGTTCTCCAGGGAGAACTCATTTAAAAGCTCTAACAAAGGAAGTATAAAGTCGCCTGATA
ATGCTCCAATGAGGTCTCAAGCAGTTAATAGTTCCGTGACCTTACCTCGGTCATATTCCTTGGGGAACTTGGCAAATGTT
AAAACACCAGGTCCTTCACCACGAGGCCTTTTATCAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis