Browse Element(s) Details


Os.23274.1.A1_at

Description gb:NM_194605.1
DB_XREF= gi:37530569
TID=Os.23274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0023I19.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0023I19.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0267010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23274.1.A1_at--992--1511Chr10:1034074..1034098 (25 bp)
AGCAGGGTGGAGACCGCGTTCTCTC
LOC_Os10g02670
Os.23274.1.A1_at--526--871Chr10:1033741..1033972 (25 bp)
ATGGCCGAGTATTATTGCTCCAAGC
LOC_Os10g02670
Os.23274.1.A1_at--900--10291Chr10:1033704..1033728 (25 bp)
TTTCCTTTGCACCTTGCGAGTATAA
LOC_Os10g02670
Os.23274.1.A1_at--203--8071Chr10:1033652..1033676 (25 bp)
GGAGAAGACGGATTGCTCACCATCT
LOC_Os10g02670
Os.23274.1.A1_at--592--3751Chr10:1033618..1033642 (25 bp)
CTCTTTTTCGCCGAGTTTGACAATA
LOC_Os10g02670
Os.23274.1.A1_at--798--7351Chr10:1033581..1033605 (25 bp)
GTGAACCGGCTATCATGTGTTGCAA
LOC_Os10g02670
Os.23274.1.A1_at--676--9191NONE
TGCCATTGCCATTTGCTGAACATGT
NONE
Os.23274.1.A1_at--952--4251Chr10:1032971..1032995 (25 bp)
CCGGTGCCTGTACTGCGAAGTTGAA
LOC_Os10g02670
Os.23274.1.A1_at--449--2331Chr10:1032941..1032965 (25 bp)
AAAGATTGTACATCCAGCTCTGGAG
LOC_Os10g02670
Os.23274.1.A1_at--751--191Chr10:1032844..1032868 (25 bp)
ATTTGCCTTAACGAATACGCTGTCC
LOC_Os10g02670
Os.23274.1.A1_at--53--4151Chr10:1032827..1032851 (25 bp)
CGCTGTCCAGCGCTTGTATGCACAT
LOC_Os10g02670
Target Sequence 
AGCAGGGTGGAGACCGCGTTCTCTCGCCGGAGGATGTCCGGTACCTCGCCGGCGTGTTGCTAGCTGAGCAGAAGCCATCT
CCGCAAGAAATCCACATGGCCGAGTATTATTGCTCCAAGCAGGAAGATTACCTTTCCTTTGCACCTTGCGAGTATAAATA
CACGCATGTCAACTTCTTGGCCACGGAGAAGACGGATTGCTCACCATCTTCCCCGGTGCTCTTTTTCGCCGAGTTTGACA
ATAAGAAGGCTGAGGGTGAACCGGCTATCATGTGTTGCAAGGTGGACATGCCATTGCCATTTGCTGAACATGTCCGGTGC
CTGTACTGCGAAGTTGAAGGAGCAAAGATTGTACATCCAGCTCTGGAGAAATTTCATGGTGGAGACAAAGAGTTTGAGGA
GGTGATCCGTGGAAAACATTCTCTCACAAATAGTCGGATTATTTGCCTTAACGAATACGCTGTCCAGCGCTTGTATGCAC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23274.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis