Browse Element(s) Details


Os.23340.1.S1_at

Description gb:CB627569
DB_XREF= gi:29622558
DB_XREF=OSIIEb02K01.f
CLONE=OSIIEb02K01
TID=Os.23340.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23340 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03350NANA5+1353872..1355110retrotransposon protein, putative, unclassified
LOC_Os05g03360NANA5+1355741..1361890retrotransposon protein, putative, unclassified
LOC_Os05g03370Os.20602.2.S1_x_at11/115+1363116..1366692transposon protein, putative, unclassified
LOC_Os05g03370OsAffx.18542.1.S1_x_at5/115+1363116..1366692transposon protein, putative, unclassified
LOC_Os05g03380NANA5+1374390..1374740hypothetical protein
LOC_Os05g03390Os.23340.1.S1_at11/115+1375331..1380822expressed protein
LOC_Os05g03400Os.51646.1.S1_at11/115+1388150..1390874expressed protein
LOC_Os05g03410OsAffx.26713.1.S1_at11/115+1395499..1399440hypothetical protein
LOC_Os05g03420NANA5+1400168..1401940hypothetical protein
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23340.1.S1_at--667--6811Chr05:1379107..1379131 (25 bp)
GTTTTTTCGTAATGCATTGGTGCTT
LOC_Os05g03390
Os.23340.1.S1_at--724--4951Chr05:1378999..1379023 (25 bp)
GCATAAATACCCCTTTTGTTTGATT
LOC_Os05g03390
Os.23340.1.S1_at--6--2451Chr05:1378955..1378979 (25 bp)
AAAATATGGCCCTTGTCCCATAGTC
LOC_Os05g03390
Os.23340.1.S1_at--317--291Chr05:1378936..1378960 (25 bp)
ATAGTCTCGGCGTCCAAAGCTGAAT
LOC_Os05g03390
Os.23340.1.S1_at--902--2291Chr05:1378892..1378916 (25 bp)
AAAGGATTACCGTGAGTGCAAATTC
LOC_Os05g03390
Os.23340.1.S1_at--746--6111Chr05:1378879..1378903 (25 bp)
GAGTGCAAATTCATGCTTATGCCAA
LOC_Os05g03390
Os.23340.1.S1_at--1050--5291Chr05:1378817..1378841 (25 bp)
GAAGGCTATGGATACTTGCATCAGT
LOC_Os05g03390
Os.23340.1.S1_at--1158--9831Chr05:1378727..1378751 (25 bp)
TACATTGGTTGGCTTTTCTGGCCTG
LOC_Os05g03390
Os.23340.1.S1_at--729--10611Chr05:1378712..1378736 (25 bp)
TTCTGGCCTGACAACATTTTTCTAG
LOC_Os05g03390
Os.23340.1.S1_at--438--6891Chr05:1378668..1378692 (25 bp)
GTATATCTGATCAATCTGCCTTGTT
LOC_Os05g03390
Os.23340.1.S1_at--698--9491Chr05:1378654..1378678 (25 bp)
TCTGCCTTGTTTTGTCCTATTGTTA
LOC_Os05g03390
Target Sequence 
GTTTTTTCGTAATGCATTGGTGCTTAATTCTATGATTTCTGAAGCTGGTGAAGCTCTTGATGAATATATCCAGACTCATT
CAGAGGTACAAATTTTTTTGAGGTCATAGCATAAATACCCCTTTTGTTTGATTTACTCCTTTCATTTAAAAAAAAATATG
GCCCTTGTCCCATAGTCTCGGCGTCCAAAGCTGAATTTTTGGTGGTACATTTTGCAAAGGATTACCGTGAGTGCAAATTC
ATGCTTATGCCAAACTATATTGAATACCAATATAAGGGTATAACTTGTTTGAAGGCTATGGATACTTGCATCAGTTAATT
GCTAAAGTTTATAAAGTTTGTTTCATCATGATGCCCCCTACAGCGAAAGGGACAGTAATATACATTGGTTGGCTTTTCTG
GCCTGACAACATTTTTCTAGCAAGGAAAGGAAAAGAAAAGTATATCTGATCAATCTGCCTTGTTTTGTCCTATTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis