Browse Element(s) Details


Os.23410.1.A1_at

Description gb:AK120963.1
DB_XREF= gi:37990586
TID=Os.23410.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039P07, full insert sequence.
FL= gb:AK120963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0969011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23410.1.A1_at--1067--91Chr07:5150156..5150180 (25 bp)
ATACCGTACTGGCAATCTTCATTTA
LOC_Os07g09690
Os.23410.1.A1_at--955--7651Chr07:5150121..5150145 (25 bp)
GGGATGGATTTGCTGATGTCCTTCA
LOC_Os07g09690
Os.23410.1.A1_at--277--6271Chr07:5150107..5150131 (25 bp)
GATGTCCTTCAGTAGCCATTTATCA
LOC_Os07g09690
Os.23410.1.A1_at--143--2771Chr07:5150057..5150081 (25 bp)
AAGACTGCTTGAGACTGACATGTAG
LOC_Os07g09690
Os.23410.1.A1_at--716--6011Chr07:5150010..5150034 (25 bp)
GAGAGTAGCCAGCTTAGTTTCAACA
LOC_Os07g09690
Os.23410.1.A1_at--812--2651Chr07:5149979..5150003 (25 bp)
AAGCCAGTGCACTATTACTCTCTTT
LOC_Os07g09690
Os.23410.1.A1_at--484--311Chr07:5149851..5149875 (25 bp)
ATACGACTCACTACAACGTGGCGGT
LOC_Os07g09690
Os.23410.1.A1_at--35--2591Chr07:5149837..5149861 (25 bp)
AACGTGGCGGTTGTTCACAGCTTAT
LOC_Os07g09690
Os.23410.1.A1_at--869--10251Chr07:5149779..5149803 (25 bp)
TTTGTCCTGCAACCTGTCATGTAAT
LOC_Os07g09690
Os.23410.1.A1_at--219--7231Chr07:5149751..5149775 (25 bp)
GTCGCTACCTGAATGAACTAGTCTT
LOC_Os07g09690
Os.23410.1.A1_at--899--5471Chr07:5149737..5149761 (25 bp)
GAACTAGTCTTTTTCTCCTTGACTA
LOC_Os07g09690
Target Sequence 
ATACCGTACTGGCAATCTTCATTTAATCAACAAAAGGGATGGATTTGCTGATGTCCTTCAGTAGCCATTTATCACTAACT
ATATCTTTGATGGTAAATTAAGACTGCTTGAGACTGACATGTAGAAATTGATTTCCTAGATTACTTGAGAGTAGCCAGCT
TAGTTTCAACATTTGATAAGCCAGTGCACTATTACTCTCTTTTCTNAAAAAAAATGGGTACAAGTTTTTAGGTACTGTAG
AAATGAATGAGCATCATTCCTGAACATGAAGAAGTGGCAATTCAGTTAAGTTACTTCTACTTCTAATACGACTCACTACA
ACGTGGCGGTTGTTCACAGCTTATCTGGTGTGGTGAGAGCTTGAAGTATANGTTGATTTTGTCCTGCAACCTGTCATGTA
ATTTAGTCGCTACCTGAATGAACTAGTCTTTTTCTCCTTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23410.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis