Browse Element(s) Details


Os.23411.1.S1_at

Description gb:AK101968.1
DB_XREF= gi:32987177
TID=Os.23411.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076J10, full insert sequence.
FL= gb:AK101968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4266011/11Fatty acid desaturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23411.1.S1_at--414--7531Chr02:25657910..25657934 (25 bp)
GTGGCATGCATCCTATGGCTGGACA
LOC_Os02g42660
Os.23411.1.S1_at--543--5931Chr02:25657945..25657969 (25 bp)
GAGCACTACGTATTCAATCCAGACC
LOC_Os02g42660
Os.23411.1.S1_at--895--9191Chr02:25657962..25657986 (25 bp)
TCCAGACCAGGAGACTTATTCGTAT
LOC_Os02g42660
Os.23411.1.S1_at--27--5671Chr02:25658007..25658031 (25 bp)
GACATGGCATGTTGGATACCACAAT
LOC_Os02g42660
Os.23411.1.S1_at--62--3011Chr02:25658029..25658053 (25 bp)
AATGAGCACCATGATTTCCCAAGAA
LOC_Os02g42660
Os.23411.1.S1_at--189--7631Chr02:25658081..25658105 (25 bp)
GGGAAATCGCACCAGAGTATTACAA
LOC_Os02g42660
Os.23411.1.S1_at--218--6631Chr02:25658167..25658191 (25 bp)
GTTGGTCCTTTCAGCCGGATGAAGA
LOC_Os02g42660
Os.23411.1.S1_at--895--5671Chr02:25658249..25658273 (25 bp)
GACATTTTCTGTGCGCATATGGTCA
LOC_Os02g42660
Os.23411.1.S1_at--709--9911Chr02:25658359..25658383 (25 bp)
TACTGATTCATTTTGTTCCGTCCAC
LOC_Os02g42660
Os.23411.1.S1_at--179--10231Chr02:25658370..25658394 (25 bp)
TTTGTTCCGTCCACACTAGAAGCAG
LOC_Os02g42660
Os.23411.1.S1_at--57--5551Chr02:25658419..25658443 (25 bp)
GAAACTGTAACCATGGCACCGAATG
LOC_Os02g42660
Target Sequence 
GTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTAT
GGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACT
GTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGT
ACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTT
AGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGNTTGTTAGACATGGTCATGTGTGCTTG
TATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAG
AAGCAGCGTTNCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis