Browse Element(s) Details


Os.2355.1.S1_at

Description gb:AF194413.1
DB_XREF= gi:6689919
GEN=CDPK1
TID=Os.2355.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.2355 (NCBI UniGene Cluster)
DEF=Oryza sativa calcium-dependent protein kinase (CDPK1) mRNA, complete cds.
PROD=calcium-dependent protein kinase
FL= gb:AK060738.1 gb:AF194413.1 gb:AK067146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0341011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2355.1.S1_at--1159--7751Chr02:1393421..1393445 (25 bp)
GGTGACGGATACATCACTCCAGATG
LOC_Os02g03410
Os.2355.1.S1_at--196--2971Chr02:1393813..1393834 (22 bp)
AATGGTGCAGCACACTGGCTTGAAG
LOC_Os02g03410
Os.2355.1.S1_at--648--5311Chr02:1393831..1393855 (25 bp)
GAAGGGTTCCATCGAGCCATTGCTG
LOC_Os02g03410
Os.2355.1.S1_at--761--1471Chr02:1393883..1393907 (25 bp)
AGAATAAGCTTGTCGGAGTTCCGCA
LOC_Os02g03410
Os.2355.1.S1_at--818--4671Chr02:1393915..1393939 (25 bp)
GCGGACAGCGAGCATGAGCAACCTT
LOC_Os02g03410
Os.2355.1.S1_at--842--3291Chr02:1393965..1393989 (25 bp)
CACAACCCCTGTGAACGTCGGTAAG
LOC_Os02g03410
Os.2355.1.S1_at--1135--9831Chr02:1394021..1394045 (25 bp)
TAAAGGTTGTCTTGTTCCTGTCCGC
LOC_Os02g03410
Os.2355.1.S1_at--126--8711Chr02:1394039..1394063 (25 bp)
TGTCCGCGTGCCATGTGATGTTGAG
LOC_Os02g03410
Os.2355.1.S1_at--292--1211Chr02:1394073..1394097 (25 bp)
AGTTTTTAGCATCCAGGTTCCGTGT
LOC_Os02g03410
Os.2355.1.S1_at--491--1011Chr02:1394087..1394111 (25 bp)
AGGTTCCGTGTGCAGCATGCAGATA
LOC_Os02g03410
Os.2355.1.S1_at--1141--1411Chr02:1394170..1394194 (25 bp)
AGAAATGCTGTTCTAGTCTCCCATT
LOC_Os02g03410
Target Sequence 
GGTGACGGATACATCACTCCAGATGAACTCAGAATGGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGA
GGAGGCCGACATCGACAAAGACGGGAGAATAAGCTTGTCGGAGTTCCGCAAGCTCCTGCGGACAGCGAGCATGAGCAACC
TTCCCAGTCCAAGAGGACCTCCAAATCCACAACCCCTGTGAACGTCGGTAAGAACCGAGATGAGACGTCGTAAATTAGTC
TTGTAAAGGTTGTCTTGTTCCTGTCCGCGTGCCATGTGATGTTGAGGGTGTCTTGAGTTTTTAGCATCCAGGTTCCGTGT
GCAGCATGCAGATAAAGTTTCGGTGTAGTACGGAGTACATACATATTTTTTTCAAAAAAAAATGTTACAAGCAGAAATGC
TGTTCTAGTCTCCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis