Browse Element(s) Details


Os.49238.1.S1_at

Description gb:AK107514.1
DB_XREF= gi:32992723
TID=Os.49238.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F02, full insert sequence.
FL= gb:AK107514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0337010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49238.1.S1_at--1133--4731Chr02:1368475..1368499 (25 bp)
GCTGTTGCTTTCATGAATCCTCCAC
LOC_Os02g03370
Os.49238.1.S1_at--388--7891Chr02:1368511..1368535 (25 bp)
GGTTCAATTCCCAGAGCCATATTTA
LOC_Os02g03370
Os.49238.1.S1_at--767--1251Chr02:1368706..1368730 (25 bp)
AGATTAGTGCACAGCTCTGACCGTG
LOC_Os02g03370
Os.49238.1.S1_at--224--1591Chr02:1368718..1368742 (25 bp)
AGCTCTGACCGTGGCTATTTTGAGA
LOC_Os02g03370
Os.49238.1.S1_at--1033--10391Chr02:1368826..1368850 (25 bp)
TTTTGAGCGAACATGGGTGGCCCAA
LOC_Os02g03370
Os.49238.1.S1_at--338--8471Chr02:1368843..1368867 (25 bp)
TGGCCCAAATGCAAACCTCGTGATG
LOC_Os02g03370
Os.49238.1.S1_at--100--6671Chr02:1368903..1368927 (25 bp)
GTTGCATCTGTCATGATCGGTTACA
LOC_Os02g03370
Os.49238.1.S1_at--763--6391Chr02:1368917..1368941 (25 bp)
GATCGGTTACATGTTGCCTGAAATA
LOC_Os02g03370
Os.49238.1.S1_at--667--3731Chr02:1368976..1369000 (25 bp)
CTACATAGTTGTTTGCAGTCGTGCA
LOC_Os02g03370
Os.49238.1.S1_at--352--6271Chr02:1369001..1369025 (25 bp)
GATGTACAGGCGATGGACACTTCTC
LOC_Os02g03370
Os.49238.1.S1_at--630--5631Chr02:1369016..1369040 (25 bp)
GACACTTCTCGCTATCTACAGTAGT
NONE
Target Sequence 
GCTGTTGCTTTCATGAATCCTCCACCAGAGTATAACGGTTCAATTCCCAGAGCCATATTTATAAATAATTAAATTTCGTT
TATAGAAGGCAGATTGCAGTTGATGACTGTGAATTCTCAACCATTGTTGTTTGTTGTGAAGGACGACAAGACTGATCTGA
AGCTAAAAAAACACCTTCAAGAACTGGAGCAAATGCTTGACCAAATTGTCAGTGAACATGTGAAGCTGCACAGATTAGTG
CACAGCTCTGACCGTGGCTATTTTGAGAGGCTTTTGAGCGAACATGGGTGGCCCAAATGCAAACCTCGTGATGTTTTTGT
TTGGAGATGTAGGCTTACAACTATTTTTGTTGCATCTGTCATGATCGGTTACATGTTGCCTGAAATAGGATATCCGTCGT
AAAATGCTGTGAAGGAACACCCTACATAGTTGTTTGCAGTCGTGCAGATGTACAGGCGATGGACACTTCTCGCTATCTAC
AGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis