Browse Element(s) Details


Os.13889.1.S1_at

Description gb:BI799207
DB_XREF= gi:15850931
DB_XREF=H127D08
CLONE=H127D08
TID=Os.13889.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.13889 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0336010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13889.1.S1_at--231--9331NONE
TCCCAAGTCTGCACTTGACAAGTTG
NONE
Os.13889.1.S1_at--968--5251Chr02:1362983..1363007 (25 bp)
GAATCCATTATTTGAGGAGGTCATG
LOC_Os02g03360
Os.13889.1.S1_at--472--2311Chr02:1363011..1363035 (25 bp)
AAAGGAGTTTGTTCGATGGATCAAT
LOC_Os02g03360
Os.13889.1.S1_at--983--671Chr02:1363038..1363062 (25 bp)
ATGACACTTTGTTCGATGGATCAAT
LOC_Os02g03360
Os.13889.1.S1_at--321--4991Chr02:1363399..1363423 (25 bp)
GCATCCAACATGCTCGTATAGAGTT
LOC_Os02g03360
Os.13889.1.S1_at--965--2991Chr02:1363437..1363461 (25 bp)
AATGACTGACCAGGATGGGAAGGCT
LOC_Os02g03360
Os.13889.1.S1_at--186--6951Chr02:1363493..1363517 (25 bp)
GTAGTAGTCTACATCTGTGAATTAA
LOC_Os02g03360
Os.13889.1.S1_at--915--10451Chr02:1363519..1363543 (25 bp)
TTACTGAGACACTAGCTTTTGAATC
LOC_Os02g03360
Os.13889.1.S1_at--736--4891Chr02:1363533..1363557 (25 bp)
GCTTTTGAATCATGCTGTAGTATGT
LOC_Os02g03360
Os.13889.1.S1_at--1070--3771Chr02:1363620..1363644 (25 bp)
CTCGATGGAGGTCTTTATAACATAT
LOC_Os02g03360
Os.13889.1.S1_at--105--271Chr02:1363641..1363665 (25 bp)
ATATGATATGTCACTTCTGCTGGAC
LOC_Os02g03360
Target Sequence 
TCCCAAGTCTGCACTTGACAAGTTGAATCCATTATTTGAGGAGGTCATGAGAAAAGGAGTTTGTTCGATGGATCAATATA
TGACACTTTGTTCGATGGATCAATATATGACACTGGAAATCGTCAAANGCATCCAACATGCTCGTATAGAGTTCAATCGA
AAGGAAAATGACTGACCAGGATGGGAAGGCTGGAAGCCTGGAACGCAAGAGATTATGACAGTGTAGTAGTCTACATCTGT
GAATTAAATTACTGAGACACTAGCTTTTGAATCATGCTGTAGTATGTTACTAGTTAAGTTCATTTCTCACTATCANCCGT
GTCCAGTATAAACTTAACTGCCANTGCTGCTCGATGGAGGTCTTTATAACATATGATATGTCACTTCTGCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis