Browse Element(s) Details


OsAffx.11873.1.S1_at

Description tigr:9630.m00232
TID=OsAffx.11873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0331010/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11873.1.S1_at--661--9591Chr02:1336793..1336817 (25 bp)
TCAAAGTTCTCCATGCCCTAAAATC
LOC_Os02g03310
OsAffx.11873.1.S1_at--1125--4531Chr02:1336807..1336831 (25 bp)
GCCCTAAAATCTGTACTCGGAGTTC
LOC_Os02g03310
OsAffx.11873.1.S1_at--570--1231Chr02:1336838..1336862 (25 bp)
AGTTCCTAGTTGATCACGGTGTGCT
LOC_Os02g03310
OsAffx.11873.1.S1_at--319--6691Chr02:1337023..1337047 (25 bp)
GTTGCCAGTGATTATCGTCTTCCAG
LOC_Os02g03310
OsAffx.11873.1.S1_at--635--8131Chr02:1337055..1337079 (25 bp)
GGACATATTGTTACCTGACCATCGA
LOC_Os02g03310
OsAffx.11873.1.S1_at--429--1291Chr02:1337441..1337465 (25 bp)
AGATCCCGTTGCCATTTGCTGAAGA
LOC_Os02g03310
OsAffx.11873.1.S1_at--190--8271NONE
GGCAGTTCTTCACAGGAGGTCTTAT
NONE
OsAffx.11873.1.S1_at--503--2771Chr02:1338435..1338459 (25 bp)
AAGAGCGACCTTCTGGAAGCAGCTA
LOC_Os02g03310
OsAffx.11873.1.S1_at--328--111Chr02:1338471..1338495 (25 bp)
ATTCTGGCCCAAAGTTTCTGATCTC
LOC_Os02g03310
OsAffx.11873.1.S1_at--278--7031Chr02:1338512..1338536 (25 bp)
GTAAACCGGGATCACTTGGCATCAT
LOC_Os02g03310
OsAffx.11873.1.S1_at--121--7271Chr02:1338542..1338566 (25 bp)
GTCCATCAACCGTACATTGTTCGAT
LOC_Os02g03310
Target Sequence 
TCAAAGTTCTCCATGCCCTAAAATCTGTACTCGGAGTTCTCAGGAAGTTCCTAGTTGATCACGGTGTGCTTCACCTATTT
GAAAGAAAGAACCAAGCAGTAGGTGAGGCACATGATAATTCTAAAGAAAATCAAGTAAATCAGGTTGCCAGTGATTATCG
TCTTCCAGTGAACAAGGACATATTGTTACCTGACCATCGAACTCCTCTTAACCCAAAAATAACACAAACAATGCAGATCC
CGTTGCCATTTGCTGAAGAGATAATTGGTGCAAGGGGACAAAATATTTCTTATATACGTTCTGTCAGTGGGGCAGTTGTT
GATCTTGAGGAAAGTAGAGATTATCCGAATGAGGTTTTAGTTATGATCAAAGGCAGTTCTTCACAGGAGGTCTTATCAGG
CAATAAAGAGCGACCTTCTGGAAGCAGCTACATCAATCTTGATTCTGGCCCAAAGTTTCTGATCTCTGGACATATCAATC
CAGTAAACCGGGATCACTTGGCATCATACCGCGTCCATCAACCGTACATTGTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis