Browse Element(s) Details


Os.5123.1.S1_at

Description gb:AU173789
DB_XREF= gi:13164992
DB_XREF=AU173789
CLONE=R3727
TID=Os.5123.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5123 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0327011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed
LOC_Os02g03240Os.41695.3.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.2.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.5.S1_x_at2/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.4.S1_x_at1/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5123.1.S1_at--35--7211Chr02:1318575..1318599 (25 bp)
GTCGTCGGAGGCCAAAGTCCCAGTC
LOC_Os02g03270
Os.5123.1.S1_at--536--4211Chr02:1318607..1318631 (25 bp)
CCTGACGAAGCTTGCATTGCATATA
LOC_Os02g03270
Os.5123.1.S1_at--234--3611Chr02:1318636..1318660 (25 bp)
CATTGTGTTGCCGTTTGTTAATTAG
LOC_Os02g03270
Os.5123.1.S1_at--824--3131Chr02:1318655..1318679 (25 bp)
AATTAGGCCCTGAAATGGATGTGCA
LOC_Os02g03270
Os.5123.1.S1_at--511--2231Chr02:1318687..1318711 (25 bp)
AAATTTTCGTACTACCATCGATCGA
LOC_Os02g03270
Os.5123.1.S1_at--851--3531Chr02:1318702..1318726 (25 bp)
CATCGATCGATCAGTCGTCGTCAGA
LOC_Os02g03270
Os.5123.1.S1_at--1146--7191Chr02:1318715..1318739 (25 bp)
GTCGTCGTCAGATCATCAGCAACCT
LOC_Os02g03270
Os.5123.1.S1_at--188--1491Chr02:1318732..1318756 (25 bp)
AGCAACCTCCGTATGATTAAATCAG
LOC_Os02g03270
Os.5123.1.S1_at--555--5371Chr02:1318778..1318802 (25 bp)
GAAGAAATTATCACACCATCCCTCG
LOC_Os02g03270
Os.5123.1.S1_at--185--551Chr02:1318795..1318819 (25 bp)
ATCCCTCGTGGACTGGTTTATCCGA
LOC_Os02g03270
Os.5123.1.S1_at--778--7871Chr02:1318809..1318833 (25 bp)
GGTTTATCCGATTAATCTGTACTTA
LOC_Os02g03270
Target Sequence 
GTCGTCGGAGGCCAAAGTCCCAGTCCCCGGAGCCTGACGAAGCTTGCATTGCATATAGTTGCATTGTGTTGCCGTTTGTT
AATTAGGCCCTGAAATGGATGTGCAGAGATGAAAATTTTCGTACTACCATCGATCGATCAGTCGTCGTCAGATCATCAGC
AACCTCCGTATGATTAAATCAGTGATGCAGTTAAATGTTAGTGGAAGAAATTATCACACCATCCCTCGTGGACTGGTTTA
TCCGATTAATCTGTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis