Browse Element(s) Details


Os.6263.1.S1_at

Description gb:AB025926.3
DB_XREF= gi:7209771
GEN=BI-1
TID=Os.6263.1
CNT=83
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6263 (NCBI UniGene Cluster)
DEF=Oryza sativa BI-1 mRNA for Bax inhibitor-1, complete cds.
PROD=Bax inhibitor-1
FL= gb:AK061953.1 gb:AK101060.1 gb:AB025926.3 gb:AK061564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0328011/11Bax inhibitor-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0006916biological_processanti-apoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6263.1.S1_at--373--9051Chr02:1329527..1329551 (25 bp)
TGCAGTTTGCCGCATCCATCTTTGG
LOC_Os02g03280
Os.6263.1.S1_at--884--3931Chr02:1329561..1329581 (21 bp)
CGGCAGCTTCATGTTTGAGGTTTAC
LOC_Os02g03280
Os.6263.1.S1_at--421--6831Chr02:1329676..1329700 (25 bp)
GTTTACTTTGGCCTGTTGATCTTCC
LOC_Os02g03280
Os.6263.1.S1_at--27--6051Chr02:1329727..1329751 (25 bp)
GAGATCATCGAGAGGGCTCACCACG
LOC_Os02g03280
Os.6263.1.S1_at--689--4831Chr02:1329742..1329766 (25 bp)
GCTCACCACGGTGACATGGACTACA
LOC_Os02g03280
Os.6263.1.S1_at--250--851Chr02:1329757..1329781 (25 bp)
ATGGACTACATCAAGCACGCACTCA
LOC_Os02g03280
Os.6263.1.S1_at--489--6651Chr02:1330131..1330155 (25 bp)
GTTGATACGGTGTGAATCTTCTCAG
LOC_Os02g03280
Os.6263.1.S1_at--438--5251Chr02:1330144..1330168 (25 bp)
GAATCTTCTCAGGTTTGTCGTCGTA
LOC_Os02g03280
Os.6263.1.S1_at--1030--7851Chr02:1330155..1330179 (25 bp)
GGTTTGTCGTCGTAGTAGCTTTGCA
LOC_Os02g03280
Os.6263.1.S1_at--1047--4971Chr02:1330187..1330211 (25 bp)
GCATGCTACATGACACGGATCTTTC
LOC_Os02g03280
Os.6263.1.S1_at--1--10591Chr02:1330209..1330233 (25 bp)
TTCTGTAATGGTGGTCGCGTTGATC
LOC_Os02g03280
Target Sequence 
TGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGGTTTACTTTGGCCTGTTGATCTTCCTG
GGGTACATGGTGTATGACACGCAGGAGATCATCGAGAGGGCTCACCACGGTGACATGGACTACATCAAGCACGCACTCAC
CCTCTTCACTGACTTCGTGGCCGTCCTTGTCCGGATCCTCGTCATCATGCTCAAGAACGCGTCTGACAAGTCGGAGGAGA
AGAAGAGGAAGAAGAGGTCTTGAGAGCTTCTCTTCCCGCTTTGCACATAAGAAAAAACCACCGCGGCTATTGCCTCTACG
TATTATGACAGAGCCGCACTTCAACTGGGTTTTATGGTGAATACAAGTTCTTTTGCATTTTGTTGATACGGTGTGAATCT
TCTCAGGTTTGTCGTCGTAGTAGCTTTGCAAATACTAGCATGCTACATGACACGGATCTTTCTGTAATGGTGGTCGCGTT
GATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis