Browse Element(s) Details


OsAffx.11874.1.S1_s_at

Description tigr:9630.m00237
TID=OsAffx.11874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11874.1.S1_s_at--1055--4231Chr02:1360585..1360609 (25 bp)
CCGTCTGCAGCGTCAGGTGATCAGC
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--15--4031Chr02:1360586..1360610 (25 bp)
CGTCTGCAGCGTCAGGTGATCAGCC
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--76--7171Chr02:1360587..1360611 (25 bp)
GTCTGCAGCGTCAGGTGATCAGCCT
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--1070--9471Chr02:1360588..1360612 (25 bp)
TCTGCAGCGTCAGGTGATCAGCCTC
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--13--9051Chr02:1360590..1360614 (25 bp)
TGCAGCGTCAGGTGATCAGCCTCCC
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--185--5071Chr02:1360591..1360615 (25 bp)
GCAGCGTCAGGTGATCAGCCTCCCA
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--763--3371Chr02:1360592..1360616 (25 bp)
CAGCGTCAGGTGATCAGCCTCCCAA
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--1057--1631Chr02:1360593..1360617 (25 bp)
AGCGTCAGGTGATCAGCCTCCCAAG
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--332--4651Chr02:1360594..1360618 (25 bp)
GCGTCAGGTGATCAGCCTCCCAAGT
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--330--4011Chr02:1360595..1360619 (25 bp)
CGTCAGGTGATCAGCCTCCCAAGTC
LOC_Os02g03360
OsAffx.11874.1.S1_s_at--373--7111Chr02:1360596..1360620 (25 bp)
GTCAGGTGATCAGCCTCCCAAGTCT
LOC_Os02g03360
Target Sequence 
CCGTCTGCAGCGTCAGGTGATCAGCCTCCCAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11874.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis