Browse Element(s) Details


Os.23648.1.S1_s_at

Description gb:AK099928.1
DB_XREF= gi:32985137
TID=Os.23648.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118C12, full insert sequence.
FL= gb:AK073799.1 gb:AK099928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51250Os.8291.1.A1_at11/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51250Os.8291.2.S1_at10/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23648.1.S1_s_at--627--6571Chr06:31008268..31008292 (25 bp)
GATTCTTCTGGTCATGATACTACAA
LOC_Os06g51240
Os.23648.1.S1_s_at--329--6591Chr06:31008482..31008506 (25 bp)
GATTGAACCAGCTTGTAGATGCAAA
LOC_Os06g51240
Os.23648.1.S1_s_at--407--1291Chr06:31008498..31008522 (25 bp)
AGATGCAAAGGATCCCGGTGATGGT
LOC_Os06g51240
Os.23648.1.S1_s_at--70--1291Chr06:31008536..31008560 (25 bp)
AGATCTCATCTGTATGGAGGTTCAA
LOC_Os06g51240
Os.23648.1.S1_s_at--937--6751Chr06:31008564..31008588 (25 bp)
GTTCAAAACATCACACTGCTCTTCT
LOC_Os06g51240
Os.23648.1.S1_s_at--165--2911Chr06:31008595..31008619 (25 bp)
AAGGTTTTGCACAACGTGTGCCCCT
LOC_Os06g51240
Os.23648.1.S1_s_at--315--4751Chr06:31008631..31008655 (25 bp)
GCTGAGACCTCTGCTTCGGTGAAAG
LOC_Os06g51240
Os.23648.1.S1_s_at--1074--1011Chr06:31008666..31008690 (25 bp)
AGGTACCTTAGCTCATAGTTGGCAG
LOC_Os06g51240
Os.23648.1.S1_s_at--694--6611Chr06:31008683..31008707 (25 bp)
GTTGGCAGATGCTTGTCTTAGCTAT
LOC_Os06g51240
Os.23648.1.S1_s_at--944--6911Chr06:31008725..31008749 (25 bp)
GTATGTTGAAGCTACCATTCGGACA
LOC_Os06g51240
Os.23648.1.S1_s_at--858--6571Chr06:31008780..31008804 (25 bp)
GATTCCCCACCTTCTATTTGATTTT
LOC_Os06g51240
Target Sequence 
GATTCTTCTGGTCATGATACTACAAAGAGTAGGGCTATCGTTGGTAATGGAGTTGGAGCTGGAAACCTAAGTGCTGGTNG
GAAAGTGAAGATCAAGAGAAAGGAACTGCTTTTGAACCANCATAATAGTAAAGATACACAAGAGGCCAAAGAAATAAAAC
CGTCTATAGATTCTATACGATACGACGAATCAAAGCAAAATGGAGCTGAAAAGAGATTGAACCAGCTTGTAGATGCAAAG
GATCCCGGTGATGGTTTGGCGCCGATGAAGATCTCATCTGTATGGAGGTTCAAAAAGTTCAAAACATCACACTGCTCTTC
TGACAGTAAGGTTTTGCACAACGTGTGCCCCTCTACTTCGGCGGCTGAGACCTCTGCTTCGGTGAAAGCTGATTAGTGAG
GTACCTTAGCTCATAGTTGGCAGATGCTTGTCTTAGCTATGTTTGTTGTGAGATTTTGTATGTTGAAGCTACCATTCGGA
CAAACAGGGAGGGCAGGTGATCTCTCCCGGTAGATTCCCCACCTTCTATTTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23648.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis