Browse Element(s) Details


Os.23675.1.S1_at

Description gb:AK119355.1
DB_XREF= gi:37988978
TID=Os.23675.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5,At5g19020 (OJ1123_G09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F11, full insert sequence.
FL= gb:AK119355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2943010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29390Os.54280.1.S1_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.49801.1.S1_s_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.10959.1.S2_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390OsAffx.31479.1.S1_x_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29409Os.33080.4.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.3.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.4.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.2.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.1.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23675.1.S1_at--844--2171Chr01:16825245..16825269 (25 bp)
ACACAGTAGGGCATATTTCGGTCTT
LOC_Os01g29430
Os.23675.1.S1_at--421--191Chr01:16825259..16825283 (25 bp)
ATTTCGGTCTTCAGCTTCACATATG
LOC_Os01g29430
Os.23675.1.S1_at--299--2271NONE
AAATCTTGGCCGGTTATTATCAGAG
NONE
Os.23675.1.S1_at--30--5192Chr04:18679831..18679855 (25 bp)
GCAAGTGCTTCTCCTGAATGTGATG
NONE
Os.23675.1.S1_at--728--8373Chr04:13484000..13484047 (25 bp)
GGCGTAGCAGCAGTACATTTTCTAT
NONE
Os.23675.1.S1_at--642--6453Chr04:13484098..13484122 (25 bp)
GATCACATGATCAAGTTGGCAGCAT
NONE
Os.23675.1.S1_at--538--1153Chr04:18680051..18680075 (25 bp)
AGTCGGAGGCGCTGTGCATATGCAA
NONE
Os.23675.1.S1_at--150--4953Chr04:18680066..18680090 (25 bp)
GCATATGCAACGTTTTCATTTCTAT
NONE
Os.23675.1.S1_at--431--7893Chr04:18680109..18680133 (25 bp)
GGTTAATACCATGTGATCTCTAATC
NONE
Os.23675.1.S1_at--914--3013Chr04:18680130..18680154 (25 bp)
AATCTAATTAGTGTGGGACCAAGCC
NONE
Os.23675.1.S1_at--309--5851Chr01:16830120..16830144 (25 bp)
GACCAGGCACCCTATATATGGGTCT
LOC_Os01g29430
Target Sequence 
ACACAGTAGGGCATATTTCGGTCTTCAGCTTCACATATGAACATTAGGTTACAAGAAACTCAATTGTCAGCAAATAAAAT
ATCCAAACTATTGTCAACAAGACAGAGATGATATTTTCAATTATTATGGAATTTTTTGCAATTTGAAATCTTGGCCGGTT
ATTATCAGAGAATATATGGGCAAGTGCTTCTCCTGAATGTGATGCATGCATGTATGGTTTAATTCCAGTTTTACTTTGCC
TCCTGGCTCCTGGCGTAGCAGCAGTACATTTTCTATGGAAGATAAAGCTTGAGAACAAAATTAATATGCTGTGATGCTGG
ATGGAAGATCACATGATCAAGTTGGCAGCATAGAGGTGACGTACAGAGGCAAGGAAGTCGGAGGCGCTGTGCATATGCAA
CGTTTTCATTTCTATGTTAATTTTCATTGTTTTGGTTAATACCATGTGATCTCTAATCTAATTAGTGTGGGACCAAGCCA
AAGACCAGGCACCCTATATATGGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis