Browse Element(s) Details


Os.23707.1.S1_at

Description gb:AK070549.1
DB_XREF= gi:32980573
TID=Os.23707.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0043P23.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057D01, full insert sequence.
FL= gb:AK070549.1 gb:AK067706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23707.1.S1_at--246--3431Chr03:35534521..35534545 (25 bp)
CAGAGGGCTGTGAATACCAGTGCAC
LOC_Os03g62910
Os.23707.1.S1_at--691--1471Chr03:35534578..35534602 (25 bp)
AGAATATGTTCGTTCTACTCCTCTC
LOC_Os03g62910
Os.23707.1.S1_at--501--9491Chr03:35534623..35534647 (25 bp)
TCTCTAGTAGCCCTGTAATGTTACT
LOC_Os03g62910
Os.23707.1.S1_at--416--9751Chr03:35534638..35534662 (25 bp)
TAATGTTACTACATGTCCCTTGCCG
LOC_Os03g62910
Os.23707.1.S1_at--330--771Chr03:35534650..35534674 (25 bp)
ATGTCCCTTGCCGTGTTTTGTTTTG
LOC_Os03g62910
Os.23707.1.S1_at--405--10411Chr03:35534670..35534694 (25 bp)
TTTTGGTGTGTATCGCACTGGGAGT
LOC_Os03g62910
Os.23707.1.S1_at--1084--2831Chr03:35534748..35534772 (25 bp)
AAGTAGCGTGTCTATCTTGGATATA
LOC_Os03g62910
Os.23707.1.S1_at--750--5251Chr03:35534818..35534842 (25 bp)
GAAGTGCCAAAGCTTCCAACTTGAA
LOC_Os03g62910
Os.23707.1.S1_at--1089--10631Chr03:35534854..35534878 (25 bp)
TTCGCTTTGTGGATGCTGCACGAGT
LOC_Os03g62910
Os.23707.1.S1_at--953--7651Chr03:35534934..35534958 (25 bp)
GGGATGCTCATGAGATGGTCGTCTA
LOC_Os03g62910
Os.23707.1.S1_at--472--6251Chr03:35534947..35534971 (25 bp)
GATGGTCGTCTAGCAATGTGTACTT
LOC_Os03g62910
Target Sequence 
CAGAGGGCTGTGAATACCAGTGCACATACAGAAATGGTGAAAGATGGTGCTACCGGTAGAATATGTTCGTTCTACTCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTAGTAGCCCTGTAATGTTACTACATGTCCCTTGCCGTGTTTTGTTTTGGTGTGT
ATCGCACTGGGAGTTGAAGAACATTCAGCTNTGGTGATGCTGAGATGTTAAATACAATGTTAAGTAAAAGTAGCGTGTCT
ATCTTGGATATATCCTATTTGTTTTTTAAAAAAATCCCAAAGTATTTGGCAGGACGGGAAGTGCCAAAGCTTCCAACTTG
AAACGTATTGAATTTCGCTTTGTGGATGCTGCACGAGTAAAACCGATATTGTGCATTATGTGTTTGTGTGGAAATATAAG
GGGTGGGTGGCAGGGGATGCTCATGAGATGGTCGTCTAGCAATGTGTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis